LOCUS       XM_017602099            3798 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Rhox homeobox family member 2B
            (Rhoxf2b), transcript variant X1, mRNA.
ACCESSION   XM_017602099
VERSION     XM_017602099.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602099.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602099.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3798
                     /gene="Rhoxf2b"
                     /note="Rhox homeobox family member 2B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 12 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363439"
                     /db_xref="RGD:1588607"
     CDS             223..3711
                     /gene="Rhoxf2b"
                     /codon_start=1
                     /product="proline-rich extensin-like protein EPR1 isoform
                     X1"
                     /protein_id="XP_017457588.1"
                     /db_xref="GeneID:363439"
                     /db_xref="RGD:1588607"
                     /translation="MVLPDGEGRNEEDSRQGQPGSEATAVGGDEAEELSGQGGRPVRT
                     AGLMDNQEDNGATGCDQENEKQPKEPVLKDMGTTEDVQSAPELVTRMHPMPLRVCRVE
                     PISVRVPRVQRIQRMVPQVQPVPRMVPRVQARPPMVPRVQAMPHMVPRVQPRPPMRPH
                     VQPMPPMVPRVQPRPPMRPRVQPGPPMRPHVQPMPPMVPRVQPRPPMVPRVQPRPPMR
                     PRVQPMPPMVPRVQPRPPIRPHVQPRPPMRPHVQPMPRMVPRVQPMPPMRPRVQPMPR
                     MVPRVQPRPPMVPCVQTVPCIMPHVQVMPRMVPHVQPMPPMVPRGQPIPHMVPSVQPM
                     PRIVPCRQPVPPMVPRGQHIPHMVPSIQAMSPIVPCVPPMPPMVPHVPPMPPMVPCGH
                     PLPPMVSHVQPMPSMVPSVPPMPPIVPHVPPMPPMVPRGQPMPPMVPRGQPMSPIVPR
                     GQPMPRMVPNVQPMPRMVPHIQPMSPMILRGQPLPCMVPCGQPMPRMVTYVQAMPPMV
                     PSVQFMPPLVLSVQPILPMVPSIQPMPPMVPHVQPMPPVVPRGQSMSRIRPCVKPMSC
                     MVPHVQAMPSMVPSVQPLPPMVPSVQPMPPMVSCGQPLTPVMPSLQPMPPIMLHVQLV
                     PGTRPQVQRVTGTMPRVQPMPGMVPNIQSVAVLVLEVQLMPYTAPHVHPMSVIVTGTQ
                     PMPIPVPHVQAVPINRPWAQPMPIPVPHIQPMPISRPRAQPMPILAPHAQPILVIVLW
                     AQSIPIPVPHIQPMSLSRPWAQPMPILVLHAQPMLVIVLWTQPMPILAPHAQTILVIV
                     LWAQSMPILVSHIQPMPLSRPWAQTMPILVPHAQPMLVIVLWVQSVPIPVPHIQPMSL
                     SRPRAQPMPIPVPHVHYMTVTVLWAQSMPIPVPHAQPMPISRPWAQPMPIPVPQPQPM
                     TVTVLWAQPIPAKLPRRPHMPMPAAQPMPARVACEHPIPLPVPSVQSMPHSVSNMQPV
                     PVTRPHSQPVPVTRPHTQPVPVTRPHTQPVPVTRPHTQPVPVAMHQVQSMRFTVPPVQ
                     PLPVMMSSVWPRPGAMPHVHPVPVMPCVQPIPVSASNVQPEPVLVPRRHLHDRFTDPE
                     LQELERVFQRNHYLSAEERKQLARGMGVSEAKLQRWFKKRREHFRREQSQSGGAPPGN
                     TPPLSEDGAGALVYHP"
ORIGIN      
        1 gggactgtgc gcccacaatt gggtgcgtag ccccttttgg ttgagacact ctcctcccgg
       61 aactgtaggg ggctccagct cagagactga aggcgctctc ggaactacaa acctcaaggg
      121 acttcgacag cattcccgtc agggagcatt gaaagagcta cccacccgtc tcgtgtgggg
      181 cctgaggagg aaaaatggga agtttcaggg tctagagcac agatggtctt gccggatgga
      241 gagggaagaa atgaggaaga cagcagacag ggccagcctg gctcggaagc cacagcagtg
      301 ggaggggatg aagcagaaga attaagtgga caaggtgggc ggcctgttcg caccgcaggc
      361 ctcatggata accaagagga caatggcgcc actggctgtg accaggagaa tgagaagcag
      421 cccaaggagc cagttctcaa ggacatgggg actaccgagg atgtgcagtc tgcaccagag
      481 ctggtaaccc gtatgcaccc tatgccactt agagtgtgtc gtgtagagcc gatttcagtt
      541 agagttcccc gggtacagcg tatacaacgt atggtgcccc aggtacagcc tgtaccacgt
      601 atggtgcccc gtgtacaggc taggccacct atggtgcctc gtgtccaggc tatgccacat
      661 atggtgcccc gtgtacagcc taggccacct atgaggcccc atgtacagcc tatgccacct
      721 atggtgcccc gtgtacagcc taggccacct atgaggcccc gtgtacagcc tgggccacct
      781 atgaggcccc atgtacagcc tatgccacct atggtgcccc gtgtacagcc taggccacct
      841 atggtgcccc gtgtacagcc taggccacct atgaggcccc gtgtacagcc tatgccacct
      901 atggtgcccc gtgtacagcc taggccacct ataagacccc atgtacagcc taggccacct
      961 atgaggcccc acgtacagcc tatgccacgt atggtgcccc gtgtacagcc tatgccacct
     1021 atgaggcccc gtgtacagcc tatgccacgt atggtgcccc gtgtacagcc taggccacct
     1081 atggtgccct gtgtacagac tgtgccatgt ataatgcctc atgtacaggt tatgccacgt
     1141 atggtgcctc atgtacagcc tatgccacct atggtgcccc gtggacagcc tattccacat
     1201 atggtgccct ccgtacagcc tatgccacgt atagtgccct gtagacagcc tgtgccacct
     1261 atggtgcctc gtggacagca tattccacat atggtgccct ctatacaggc tatgtcacct
     1321 atagtgccct gtgtaccgcc tatgccacct atggtgcctc atgtgccgcc tatgccacct
     1381 atggtgccct gtggacaccc tctgccacct atggtgtccc atgtacagcc tatgccatct
     1441 atggtgccct ctgtaccacc tatgccacct atagtgcctc atgtaccacc tatgccacct
     1501 atggtgcccc gtggacagcc tatgccacct atggtgcccc gtggacagcc tatgtccccg
     1561 atagtgcccc gtggacagcc tatgccacgt atggtgccta atgtacagcc tatgccacgt
     1621 atggtgcccc atatacagcc tatgtcacct atgatactgc gtggacagcc tcttccatgt
     1681 atggtgccct gtggacagcc tatgccacgt atggtgacct atgtacaggc tatgccacct
     1741 atggtgccct ctgtacaatt tatgccccct ctggtgctct ctgtacagcc cattctgcct
     1801 atggttccct ctatacaacc tatgccacct atggtgcccc atgtacagcc tatgccacct
     1861 gtggtgcccc gtggacagtc tatgtcacgt atacggccct gtgtaaagcc tatgtcatgt
     1921 atggtgcccc atgtacaagc tatgccatct atggtgccct ctgtacagcc tttaccccct
     1981 atggtgcctt ctgtacagcc tatgccacct atggtgtcct gtggacagcc tttgacacct
     2041 gtgatgccct ctttacagcc tatgccacct ataatgctcc atgtacagct tgtgccaggc
     2101 actaggcccc aagtacagcg tgtgacaggc acaatgcccc gtgtacaacc tatgccaggt
     2161 atggtaccca atatacagtc tgtggcagta ctggtgcttg aagtacagct tatgccatat
     2221 acggcacccc atgtacaccc tatgtcagta atagtgactg gtacacagcc tatgcccatc
     2281 cctgtgcccc atgtacaggc agtgccaatt aataggccct gggcacagcc catgcctatt
     2341 cctgtgcctc acatacagcc tatgcctatt agtaggccca gggcacagcc catgcccatt
     2401 ctggcaccac atgcacagcc tatactagtc attgtgctct gggcacagtc tattcccatt
     2461 cctgtgcccc atatacagcc tatgtcactc agtaggccct gggcacagcc tatgcccatt
     2521 cttgtgctcc atgcacagcc tatgctagtc attgtgctct ggacacagcc catgcccatt
     2581 ctggcaccac atgcacagac gatactagtc attgtgctct gggcacagtc tatgcccatt
     2641 cttgtgtccc atatacagcc tatgccactc agtaggccct gggcacaaac tatgcccatt
     2701 cttgtgcccc atgcacagcc tatgctagtc attgtgctct gggtacagtc tgtgcccatt
     2761 cctgtgcccc atatacagcc tatgtcactt agtaggcccc gggcacagcc tatgcccatt
     2821 cctgtgcccc atgtacatta tatgacagtc actgtgctct gggcacagtc tatgcccatt
     2881 cctgtgcccc atgcacagcc tatgccaatc agtaggccct gggcacagcc tatgcccatt
     2941 cctgtgcctc aaccacaacc tatgacagtc actgtgcttt gggcacagcc aataccagct
     3001 aagttgccta gaagaccaca tatgccaatg cctgctgctc agcctatgcc agccagggta
     3061 gcttgtgaac atcccatacc acttccagtg cccagtgtgc agtctatgcc acattctgtg
     3121 agcaatatgc agcctgtgcc agttacaaga ccgcattcac agcctgtgcc agttacaaga
     3181 ccgcatacac agcctgtgcc agttacaaga ccgcatacac agcctgtgcc agttacaaga
     3241 ccgcatacac agcctgtccc agttgcaatg caccaggtac aatctatgag atttacagta
     3301 cctcctgtac agcctctgcc agttatgatg tctagtgtat ggcctaggcc aggcgcaatg
     3361 ccccatgttc atcctgtgcc agttatgccc tgtgtccagc ctattccagt ttcagcgtcc
     3421 aatgtacagc ctgagccagt gctggtgcct cgccgccatc tccatgacag atttacagac
     3481 ccagagctgc aggagctgga acgcgttttc cagaggaatc actatctcag tgctgaagaa
     3541 agaaaacagc tggcaagggg gatgggcgtg agtgaggcca aactgcagag atggtttaag
     3601 aagaggagag aacacttcag gagagaacaa agtcagtcag gtggtgctcc tcctgggaat
     3661 actccacctc tctctgaaga tggcgcagga gccctagtgt accacccttg acctagagcc
     3721 actggcagac gcctgctttc ttccaccaac atgttattgc ctctttatcc cctaagcact
     3781 tgtatttgaa ataaatag
//
