LOCUS       NM_001024874             829 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus reproductive homeobox 9 (Rhox9), mRNA.
ACCESSION   NM_001024874 XM_216470
VERSION     NM_001024874.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ058656.1.
            
            On Jun 17, 2005 this sequence version replaced XM_216470.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ058656.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132271,
                                           SAMD00132274 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..829
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /note="reproductive homeobox 9"
                     /db_xref="GeneID:298352"
                     /db_xref="RGD:1563844"
     exon            1..90
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /inference="alignment:Splign:2.1.0"
     CDS             9..692
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /note="reproductive homeobox on X chromosome, 9; Rhox
                     homeobox family member 9; homeobox protein PSX4"
                     /codon_start=1
                     /product="reproductive homeobox 9"
                     /protein_id="NP_001020045.1"
                     /db_xref="GeneID:298352"
                     /db_xref="RGD:1563844"
                     /translation="MDTPQDSCQSFQKSLSLGAEVDPEQQHGGTAVVSEAREVGDQSQ
                     RLVGGLVQGGLDQGQPTQGQLAGGNLPQEEPAELSLAQEATGVEEEGDEKEEEMEARY
                     AGDGAYGPEDNNVQQEGDQHPNDQEQPQQEAAIPEGNRGQQAGNRLVHPRHTRPRFTH
                     SQLRDLERLFQETRYPSLRTRKDLARWMGVPESDVQDWFRMRRSLFRRNSRLLMFCEL
                     PPIPENNPS"
     exon            91..550
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /inference="alignment:Splign:2.1.0"
     exon            551..596
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /inference="alignment:Splign:2.1.0"
     exon            597..829
                     /gene="Rhox9"
                     /gene_synonym="Psx4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttcgccat ggacactcct caagacagct gccaaagttt ccaaaagtct ctgagtctgg
       61 gagctgaggt ggacccggag caacagcatg gtgggactgc agtggtctca gaggctagag
      121 aggtaggaga ccaatcacag cgtttagtgg gcgggcttgt tcagggtggg cttgatcagg
      181 gccaacccac gcagggccag ttggctggag gcaaccttcc tcaagaagag cctgctgagc
      241 tcagtctcgc tcaggaagcc acaggagtag aagaggaggg agacgagaag gaagaagaaa
      301 tggaagcaag atatgctggt gatggtgctt acggccccga ggacaacaac gtccagcaag
      361 aaggtgacca acaccccaat gatcaagagc agcctcagca agaggcagcc attcctgagg
      421 gcaacagggg ccaacaggct gggaaccggc tggttcaccc gcggcacact cgccccaggt
      481 tcacccactc tcagctgcgt gatctggagc gcctgttcca agagactcgc taccccagct
      541 tgcgaacaag gaaggacctt gcacgatgga tgggtgtgcc agaatctgat gtgcaggatt
      601 ggttccggat gagaagatct cttttccgca gaaacagcag actgctgatg ttctgtgaac
      661 ttccaccaat tcctgagaac aacccttctt aaagattttg gagcagcact tgagtgccac
      721 ccctgtccca gagccacatg aggaaggctt cttctgagcc acccataatg gccatgacta
      781 cctttacttc cctacagtta tttgagcaat aaagacgtgg attctaagt
//
