LOCUS       NM_001408904             989 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Rhox homeobox family member 13 (Rhox13), mRNA.
ACCESSION   NM_001408904 XM_001077350
VERSION     NM_001408904.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jun 30, 2022 this sequence version replaced XM_001077350.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.622611.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-642               JAXUCZ010000021.1  121776875-121777516
            643-688             JAXUCZ010000021.1  121779724-121779769
            689-989             JAXUCZ010000021.1  121783106-121783406
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq35"
     gene            1..989
                     /gene="Rhox13"
                     /note="Rhox homeobox family member 13"
                     /db_xref="GeneID:691244"
                     /db_xref="RGD:1586264"
     exon            1..642
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..808
                     /gene="Rhox13"
                     /note="rCG53272-like; homeobox protein Rhox13"
                     /codon_start=1
                     /product="reproductive homeobox 13"
                     /protein_id="NP_001395833.1"
                     /db_xref="GeneID:691244"
                     /db_xref="RGD:1586264"
                     /translation="MAQRVSFDHNYYFMECEEETNAGVQARAVASTSTMEASGAMAVA
                     QAGAACRSHASRGTIGYDTVYEPNVKGDPKQESESDTEESYDDEDDDEDEGDEDDLST
                     SDQDTSDPEQEEAALFVAAAAPPIAPAAAAIQIPGPHRSRRRRHRRHRRSSPYLFTQW
                     QVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQRKNERRAMLRNMP
                     SGAEDFIFMTDVEEPC"
     exon            643..688
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
     exon            689..989
                     /gene="Rhox13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttgctttc ggcttccgtc tcgatcagca aaagacgcca ggcatcgagg tagttcgttc
       61 ctagggcccc aaagctcttg gtggcttcgg cccagttcta gttatggccc agagggtctc
      121 ttttgaccac aactattact ttatggagtg tgaggaggaa acaaatgctg gcgtccaggc
      181 tcgggccgtg gcctccacct caaccatgga ggcctcaggc gctatggcgg tggcgcaggc
      241 aggggcagcg tgcaggagcc atgccagtcg aggaaccata ggctatgaca ctgtgtatga
      301 gccaaatgtc aagggtgatc cgaaacagga gagtgagagc gacacggagg agagttacga
      361 tgatgaagat gatgatgaag atgaaggtga tgaagatgac ttgagcacca gcgaccagga
      421 tacttcagat cctgagcagg aggaggcagc tctttttgtg gctgctgctg ctcctccaat
      481 tgctcctgct gctgctgcga ttcagattcc gggcccccac cgttcccgcc gacgccgaca
      541 ccgacgccat cggcgtagct ccccatacct cttcacgcag tggcaggtcg aggaaatgga
      601 aaacctgttt gaagagaccc cgtacccaga tgtgcttaca aggggagagc ttgcaagaac
      661 tttgaatgtg cctgaagtca aagtgaaggt gtggtttagc aatcggagag ccaagcagag
      721 gaagaatgag agacgagcaa tgctgagaaa tatgccatct ggtgctgaag acttcatttt
      781 catgacggat gtggaagagc cttgttaatg tgccatcctt attcagaaga caaagggcaa
      841 cttagtgacc tatgtgccca atgtcaggct taactattca gcatgcacat tactaataaa
      901 agcatgaatt tccatgttgc ttaacttcat gtgtgttctg gggctttgta cgacatgatg
      961 taggctattc aggatgtagg ctatttaag
//
