LOCUS       XM_039078106            5478 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ras homolog family member Q (Rhoq),
            mRNA.
ACCESSION   XM_039078106
VERSION     XM_039078106.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5478
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5478
                     /gene="Rhoq"
                     /note="ras homolog family member Q; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 39 ESTs, 2 long SRA reads, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:85428"
                     /db_xref="RGD:621626"
     CDS             1..1068
                     /gene="Rhoq"
                     /codon_start=1
                     /product="rho-related GTP-binding protein RhoQ"
                     /protein_id="XP_038934034.1"
                     /db_xref="GeneID:85428"
                     /db_xref="RGD:621626"
                     /translation="MEGMKCPTNLSTHHFSINYELSERQERTAGAGAGPAGTREPRDR
                     PPPRLGGRGPGRAGGQSRLAPPRPPPSPKCRLSPGAGRSYGSGGFLLGGRAGERVRGA
                     ERRGQQPGAASGTRAGEAGERSKRRGCAPGPPHLLPPVREPLHGGRGGGPAAAERRAT
                     ADPPGGWGLSPGPGRGSGGPCPEAGRPQHGSRARALMLNSAWWSATGRWVRRACFMSY
                     ANDAFPEEYVPTVFDHYAVSVTVGGKQYLFGLYDTAGQEDYDRLRPLSYPMTDVFLIC
                     FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCV
                     EQGQKLAKEIGACCYVGMLRL"
ORIGIN      
        1 atggagggta tgaagtgtcc cacgaacctc tcaacgcacc atttttctat caactatgaa
       61 ctgagtgagc ggcaggagcg cacggcgggc gcgggcgcgg ggcccgcggg cacccgggag
      121 ccccgggacc gccctccccc ccgtctaggc gggcgggggc cggggcgcgc gggcgggcag
      181 agccgtctgg cccctccccg tccgccgccc tccccaaagt gccgactctc ccctggggcc
      241 ggacggtctt atggatccgg cggattcctc ctgggaggcc gggccgggga gcgggttcgg
      301 ggcgccgagc ggcggggcca gcagccgggc gcggcgagcg ggaccagggc gggggaggcg
      361 ggggagcgat cgaagcggcg cggctgcgct ccgggcccgc cgcaccttct ccctccggtc
      421 agggaaccgc tgcatggggg ccgggggggc ggccctgctg cggccgagcg gcgggcgacg
      481 gcggaccccc caggcggctg ggggctgagc ccggggccgg ggcggggctc cgggggacca
      541 tgccccgagg ccggccggcc gcagcatggc tcacgggccc gcgcgctgat gctcaatagt
      601 gcgtggtggt cggcgacggg gcggtgggta agacgtgcct gcttcatgag ctatgctaac
      661 gacgccttcc ccgaggagta cgtgcccact gtcttcgacc actacgcagt cagcgtcacc
      721 gttgggggca agcagtacct ctttggactc tatgacacag ctggacagga agactatgat
      781 cgtctgaggc ctttatctta ccccatgact gacgtcttcc tcatatgctt ctctgtggta
      841 aatccagcct catttcaaaa tgtaaaggag gaatgggtac cagaactaaa ggaatatgca
      901 ccaaatgtcc ccttcttgtt aataggaact cagattgatc tccgagatga ccccaaaact
      961 ttagcaagac tgaatgacat gaaagaaaaa cctgtctgtg tggaacaagg acagaaacta
     1021 gcaaaagaga tcggcgcatg ctgctatgtg ggaatgctca ggctctgacc cagaagggtt
     1081 tgaagactgt gtttgaacga ggctatcata gccattttaa ctccaaagaa acacacagta
     1141 aaaaagagaa tagggatcaa gatgtataaa ctgttgtttg agttacgtga gaaacagtct
     1201 ttagtggcca aggaaactgt catttctccc gagaaagcat ttgaaatgct acagcaatgt
     1261 cctgacctct tacaatgaag cagtttaact tgagggggga ggagcctgtc ctcactcatc
     1321 ctacagagtt cattggagaa tgtttcataa aggtctaagc ggcagcgaac agcatctgaa
     1381 gcccacaatc tactataaat actttatttc aactagaagg tacaatctct caggggtttc
     1441 atagttaaaa agctacaatc acatcaagtt gaaatgacat ttagaaaacc acagtgctgt
     1501 aaatggacgg ctcggctttg aaccacgtca cttctgcaca gcccttatgg actctgcaca
     1561 aagaaatcac ttctctccct tctcctctta attgttcttg tatgtaagtt gctttctatt
     1621 ccagtatatc cagagtggcg agataaccag gccagccacg tagccaaagg tcgctcccga
     1681 gtgtacagga gatggccaca cctaaggaaa gaattgagat ctaagccaac cgatgcttta
     1741 ttacacatga gcacaaatga agtgtactgc acacatttct atagtgaagc ttagtgtgct
     1801 tcataaagaa tgccaattta ataggtcatg actgcattga tcataacact aaaagtgtcc
     1861 acattttagt taatgtgcat taaacagtaa catggcctct ggcaactgta ctctagttct
     1921 tttatctaaa ctgcatgaaa tacatgcaaa agtaacatta aaaatgggtc attgtttacc
     1981 agtaatcctg aactccagtt tgggctctga attagttggc catttttcta actcctacac
     2041 tggctgtgta catcaaatga aataagtgag caaaccttag aaacgttcag tcgtgtgaga
     2101 gggaaagacg tggatgcgag catgtcacgt ggaatttgtg gttatctctt ccatggtaag
     2161 ctgatgccac ttggactgca gatagtgttc cacagcagaa ggtctacaca ccacagctta
     2221 cgtacacacc tagacgtgag gcaagaacac actccccacg ctacatctca ctatgcaaaa
     2281 tagaggagac tttttatgcc acagacaggg tgtgtgtgta aagtcttgca gacaccttca
     2341 tgtcctttgt aaagcttatc tgtgtactgc agcctttctt acccttctca tggggaatcg
     2401 gccatccaag tgtactggag ggaaaccatc ctaataactg gctgctacct cgttggcttt
     2461 cttcttccgt ctgcttatgg atctgcctta ttcctaaatg ccatgcacca gacagtagtg
     2521 taggcaaagc ttccatgaac cacctcaatg cagtctgggg aagcgcaagc gaatccacac
     2581 attggcacca gctctccctt aggttcaaag ttctgttgct aaactacgac atctgtcttt
     2641 aggcaagctt ctgttatctt ccatggtttg tggcttaagc tggtctagtg cacagattgg
     2701 gtaatggaac actaacattt atacttgaaa atgacagcct taaatgttca taaccagtca
     2761 caaatctaga tgtactgtct tgcatgtgag ctttgtagga gtttttaaaa tatgacacca
     2821 cacccccacg cggtagcaga ccgtctactg acaagagctc tcttggaagt ggacgcagga
     2881 tgtcctcagg cagtggcgtt cacattaggt atatcatggc ttatttatgt atgctcaaat
     2941 gggacttctg tattttccca tttagtttcg gtcttgtttt agatagaatt gaaagaaatt
     3001 gtatagtcgg ctaacgtact agctaagttg tcaaacctat gatatgaagg aatcaagaca
     3061 gtaaagtatt attcatttcc tagttgggcc cctttggaga tttgatggtt tgtttttttc
     3121 ttcaattcta catctgtgaa acccttgaca ctcggtgtgt tagcaatgag ataaagtcaa
     3181 ggacttgcct gcttcaagag aaaaggatta agaatctaaa ggtgcagtgg tgtcacctca
     3241 gtctcctcat gtgtggccgt gggggggacg accgtgtgtc ctagtcattc ttggagcgct
     3301 tatcactctc tcctattgac agcattgccg ttgggcttca gcttctccag atggtaagaa
     3361 tcattacaca gactgtttga actctaagca gacgattgta tcatcgaaac tgaggtgcct
     3421 taggtactct acttacctgg atggggtttg gagtttccca ttgcttgtta agagctcttt
     3481 gtgtttgtta ttaatatttc tttttgcaaa atcttctctg ccactttaag cataaaacca
     3541 aagatttgtt ttctattcat gaacagatta tagagagact gccttatttt cagacgcatg
     3601 tcttcattaa tggcttagtt gccacagaaa ttcagactaa tctctggaat aactctttca
     3661 aactagtgaa atatcgggga aagaattctt ctcaatgttt ttttaatatg aaactgtgtt
     3721 agtaagaaca ctgcttcaaa taaggttcat gtgtgaaaga acatacaaca aattatagtt
     3781 ggttagtgtt tgcatagaaa atctggttct agaagccctt taaatttgag gggaatcctg
     3841 cactctaaca gcctctcttt gctaacgtat gcccttcctg tccttgcagg atcattgtag
     3901 ctcactcgtg atgaattatc atattcaata cacagagctt gagttcatac tacttgttat
     3961 cttagttatt ttacatactg cttccgtttg actttcaatg attggtttta aataccaaat
     4021 taaatgctgg tttgttggtt gttgttttta aatgattgtt acttcaatag catcccctcc
     4081 tgacatatgg agtcataata aaatgagatg catagtttac tgttttatgt aaagcactga
     4141 acttcttacc ttaggagttt ttatttaatc ccctctcctc tgctgtgtga cggctcaccc
     4201 tggcaacctg taagctcttg cgtcccctaa gaaggtcagg gtgtggggga aaaaacaatc
     4261 ctaatgggtc ccagccacat tcttatttgc accaagttct gttttaatca ctctgtgact
     4321 tcagtgtggt tctctgttct caaacacaca cacacacaca cacacacgca cacgcacacg
     4381 cacacgcaca cgcacgcaca cactcactca cacacacacc cttttgacat ttgccatact
     4441 tcacctccaa agactggaaa ataaagcaaa tgttgttttc agtgttttcc tcctgccagg
     4501 gggtaaggct tggagcactc agcaattcag tcacataaga cttagccatc cctgccagca
     4561 aagtaaactt cgaatgattc cctagtgatg ccccaggctt tgtgggtacc agggtgctgc
     4621 tgtgagtccc ctgcagtaca actcgcaagt ccttaactgt tgacagttct ctcttcctcc
     4681 cggctttctc atgattactg taaaatgttt aaaccacacc acagcacaga attcatcctg
     4741 acttatccag tcagcctagt ttaattatat tttaataatg ggatcttaag ttttccactt
     4801 aaagatttcc ttgtttcaca gatactattt ttattttctt catgccacaa tattttaaaa
     4861 aatctgtagc acctattagc tagttcagct gcagaaatat aaatatttct ctaaattatc
     4921 tgaaatagct acatataatt attgttttat gtaaggaaaa taggaaattg aaaacagaga
     4981 cattcatatt aagaaagcca ttcccagggt ttgtcaccaa agtgacaatc attttatcta
     5041 gtttccttag cttcaaatgt ttctttaaat gactcaatgg aagaaccatc tcatgtgcat
     5101 aacagtgtaa caaccaagta gataaactta caggcaccaa aggaaaccgt ttaaaggatg
     5161 agcggctcca tcaggtgaaa agccagcatc ctcggtatgc atcatgcaca cacctctcat
     5221 gcccgaaatc aggaggcaag gaagacacgg atggggaatt tgaagccatg ccgttgtttt
     5281 agggtcactg tgctttaatg gaagcacaga atgcaaaagt gacttgggga aggaagaaag
     5341 gaaaaagaaa gaaaggctta cacttgcaca tcactgccat ctaaggtcgt ctgagtaaga
     5401 actcacacgg ctagcaagcg caaggccctg ggttcgatcc ccagctccga aaaaaagaaa
     5461 aagaaaaaaa aaaaaaaa
//
