LOCUS       NM_001191822            1512 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus rhomboid like 1 (Rhbdl1), mRNA.
ACCESSION   NM_001191822 XM_340773
VERSION     NM_001191822.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Pascall,J.C. and Brown,K.D.
  TITLE     Characterization of a mammalian cDNA encoding a protein with high
            sequence similarity to the Drosophila regulatory protein Rhomboid
  JOURNAL   FEBS Lett 429 (3), 337-340 (1998)
   PUBMED   9662444
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jul 17, 2010 this sequence version replaced XM_340773.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.173379.1,
                                           SRR26643297.33362.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840108,
                                           SAMN12840109 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                JAXUCZ010000010.1  15361574-15361667   c
            95-256              JAXUCZ010000010.1  15360997-15361158   c
            257-481             JAXUCZ010000010.1  15360555-15360779   c
            482-630             JAXUCZ010000010.1  15360331-15360479   c
            631-743             JAXUCZ010000010.1  15360052-15360164   c
            744-844             JAXUCZ010000010.1  15359855-15359955   c
            845-905             JAXUCZ010000010.1  15359714-15359774   c
            906-1512            JAXUCZ010000010.1  15359027-15359633   c
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1512
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /note="rhomboid like 1"
                     /db_xref="GeneID:117025"
                     /db_xref="RGD:620699"
     exon            1..94
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..1177
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /EC_number="3.4.21.105"
                     /note="rhomboid protease 1; RRP; rhomboid-like protein 1;
                     rhomboid, veinlet-like 1"
                     /codon_start=1
                     /product="rhomboid-related protein 1"
                     /protein_id="NP_001178751.1"
                     /db_xref="GeneID:117025"
                     /db_xref="RGD:620699"
                     /translation="MDRSSLLQLIQEQQLDPENTGFIGADTFAGLVHSHELPLDPTKL
                     DMLVALAQSNERGQVCYQELVDLISSKRSSSFKRAIANGQRALPRDGLLDEPGLGIYK
                     RFVRYVAYEILPCEVDRRWYFYRHRTCPPPVFMASVTLAQIIVFLCYGARLNKWVLQT
                     YHPEYMKSPLVYHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLR
                     ISLLYLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLLR
                     MVLALVCMSSEVGRAVWLRFSPPLPASGPQPSFMAHLAGAVVGVSMGLTILRSYEERL
                     RDQCGWWVVLLAYGTFLLFAIFWNVFAYDLLGADIPPPP"
     exon            95..256
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            257..481
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            482..630
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            631..743
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            744..844
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            845..905
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1512
                     /gene="Rhbdl1"
                     /gene_synonym="Rhbdl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtccgcagag cagcccctcc cggcctcggc cgaccccggc cctaggcccg gctctatgga
       61 caggagctcg ctgctgcagc tcattcagga gcagcagctg gatcctgaga acacaggctt
      121 catcggtgcg gacaccttcg ctggtctggt acacagccat gagttgcccc tggaccccac
      181 caagttggac atgttggtgg ctctggctca gagcaacgag aggggccagg tctgctacca
      241 ggagctggtg gacctgatca gcagcaagcg ctccagcagc ttcaagagag ccattgctaa
      301 cggacagcgg gcactgcccc gggatggact gctagatgag ccaggcctgg gcatctacaa
      361 acggtttgtg cgatatgtgg cctacgagat cctgccctgt gaggtggacc gccgctggta
      421 cttctacagg caccgcacct gcccaccccc tgtgttcatg gcctcggtca cccttgccca
      481 gatcatcgtg ttcctgtgct acggggcacg gctcaacaag tgggtgctcc agacctacca
      541 ccccgaatac atgaagagcc ctctggtcta tcacccagga caccgtgctc gggcctggcg
      601 cttcctcacc tacatgttca tgcatgtcgg gctggagcag ctagggttca atgccctgtt
      661 gcagctgatg atcggggtgc ccctggagat ggtacacggc gtgcttcgca tcagcctgct
      721 ctacctggca ggtgtgctgg caggctccct gactgtctct atcacagata tgcgtgcccc
      781 cgtggtaggg ggctctggag gggtctatgc cctgtgctcg gcacacctgg ccaatgttgt
      841 catgaactgg gctgggatgc ggtgtccgta caagctgctg cggatggtgc tggctctggt
      901 gtgcatgagc tccgaagtgg gccgggctgt gtggctacgc ttctccccac cactgcctgc
      961 ctcaggccca cagcctagct tcatggcaca cctggctggt gcagtggtag gtgtaagcat
     1021 gggccttacc atccttcgaa gctatgagga gcgcctgagg gaccagtgcg gctggtgggt
     1081 ggtgctactt gcctatggca ccttcctgct tttcgccatc ttctggaacg tctttgccta
     1141 tgacctgctg ggtgccgata tcccccctcc accttgacct gctccttagg gccgtatggc
     1201 ttgagctagg ccttcagtgg gtcagccacc aggtgggcct gcatgtctgc cctctaggaa
     1261 tggacctctt ggctgctttt ccccacgggg ggacaggggg gccctgtgat ccccccagct
     1321 gaagccaagt cttactgcag cccttgctgc ccctcccagg cctttccagg gggaggggtg
     1381 ctgctaggcc agggctgggt ggaggacctt gaatgtggcc ctagaggagc tcccttccct
     1441 ccccaccgac ccctcccagg acttgcagtc tgagcctttt tggagaatga ataaatattt
     1501 tacacagcac ca
//
