LOCUS       NM_001399573            5685 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus RGP1 homolog, RAB6A GEF complex partner 1 (Rgp1),
            mRNA.
ACCESSION   NM_001399573 XM_006238138
VERSION     NM_001399573.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5685)
  AUTHORS   Pusapati,G.V., Luchetti,G. and Pfeffer,S.R.
  TITLE     Ric1-Rgp1 complex is a guanine nucleotide exchange factor for the
            late Golgi Rab6A GTPase and an effector of the medial Golgi Rab33B
            GTPase
  JOURNAL   J Biol Chem 287 (50), 42129-42137 (2012)
   PUBMED   23091056
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006238138.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1431528.1,
                                           SRR26360172.708060.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-223               JAXUCZ010000005.1  62630253-62630475
            224-358             JAXUCZ010000005.1  62630841-62630975
            359-495             JAXUCZ010000005.1  62631349-62631485
            496-579             JAXUCZ010000005.1  62631737-62631820
            580-729             JAXUCZ010000005.1  62631918-62632067
            730-876             JAXUCZ010000005.1  62632292-62632438
            877-1004            JAXUCZ010000005.1  62632624-62632751
            1005-1194           JAXUCZ010000005.1  62632927-62633116
            1195-5685           JAXUCZ010000005.1  62634382-62638872
FEATURES             Location/Qualifiers
     source          1..5685
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..5685
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /note="RGP1 homolog, RAB6A GEF complex partner 1"
                     /db_xref="GeneID:313493"
                     /db_xref="RGD:1311757"
     exon            1..223
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            224..358
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..1418
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /note="RGP1 retrograde golgi transport homolog"
                     /codon_start=1
                     /product="RAB6A-GEF complex partner protein 2"
                     /protein_id="NP_001386502.1"
                     /db_xref="GeneID:313493"
                     /db_xref="RGD:1311757"
                     /translation="MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAW
                     ASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCD
                     LRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLV
                     LTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNISD
                     GRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTG
                     VAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREP
                     GLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI"
     exon            359..495
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            496..579
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            580..729
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            730..876
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1004
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1194
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..5685
                     /gene="Rgp1"
                     /gene_synonym="RGD1311757"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctccagcc gggatcccca gctcccgcgc tcaggtgcca cctctgggaa ggtgacccgc
       61 agccctggta ccacccgatc cctttccggc cggaagcacc ccgcaggtcg gaccggaaga
      121 ggcgcctcaa ctctgagatg tgacaaagga agtcccgcct ctgccgcgcg acagactccg
      181 tggatgccac cgagctctga gccggtctcg caggggcggg cagatttggt tctggagctg
      241 ccatgattga agtggtagct gagctgagcc gaggtcctgt atttctggcc ggggaggctc
      301 tggaatgtgt ggtgactgtt actaatcccc tgcccccgac cgccacttct gcatccagtg
      361 aggctctggc ctgggccagt gcccagatcc actgccagtt ccatgccagc gagagtcgag
      421 tagcactgcc accccctgac tctagtcagc cagatgtcca gcctgacagc cagactgtct
      481 tcctgccgca ccgaggtgag aggggccagt gtatcctgtc tactccacca aaaattctgt
      541 tctgtgacct gaggctagac cctggagagt ccaaatcata ctcctacagt gaagtgctgc
      601 ccacagaggg gccaccttcc tttcggggtc agtcagtcaa gtatgtctac aaattgacca
      661 ttggctgcca gcgtgtcaac tcacccatca ctttactccg agtccctttg agagttctcg
      721 tgctgactgg tcttcaagat gtccactttc cccaggatga ggctgtggct ccatccagtc
      781 cattcttaga ggaggacgac agtgggaaga aggattcatg gctggctgag ctagcgggcg
      841 agcgcctcat ggccgctaca tcctgccgca gcctccatct gtataatatc agcgatggcc
      901 gagggaaagt tgggacattt ggtatcttca aatctgtgta cagactcggc gaggacgtgg
      961 tggggacctt aaacttaggg gaaggaactg tagcttgtct gcagttttca gtaagcttgc
     1021 aaactgaaga gcgggtacag cctgaatacc agcgacgccg tgggaccgga gttgcccctt
     1081 ctgtgtctca tgtgactcat gcccggcacc aggagtcctg cctacataca accagaacca
     1141 gcttctctct ccccatccct ctatgctcta cccctggctt ctgcactgcc attgtgtcct
     1201 tgaagtggcg attacatttt gaatttgtaa catcccgaga accaggattg gtgcttctgc
     1261 ctccattgga gcagcccgag cctgcaacct ggacaggacc tgaacaggtg cctgtagaca
     1321 ccttcagctg ggacctcccc atcaaagtgc ttcctacaag ccccaccctg gtctcatatg
     1381 ctgccccagg ccctagcacc agcagtataa ctatctgaaa ctggctcgca tgcccaccat
     1441 ggcaagaaac tgagaactcg acacctggac tccagtgggg ccactttccc acctggggcc
     1501 ctgtagcaag gcagtgggga acggacttac agctgtagca ttaatttatt tatttggagg
     1561 aagtaggcag ctgctagtgg tttccctgga agtggcagca gcagtgagct ttcagcagat
     1621 gggtgagcct ttagctggag tggggggcag gagccccacg agcaggggtg ttagccgagc
     1681 cccattctaa gtcaggtcct ccccctttgc agggcagccg agggtcagct ttttgcacca
     1741 gggaaaactg acaggttccg gcctcctgtt gcagttcaca cccagcaggg aagtcaatgg
     1801 gatgctgaga cctagtgaac caaagactgg aagtcagtac agtaaaaagc cacctttagg
     1861 ggcctgccct tcccactcag ccatcctccc acaccctctt ttagtgtccc agcatcccta
     1921 gctaagctct ctactcccac ataaggaccc tctagtgttc ccaagcagga ctttttccct
     1981 gcggatctac ctcgactccc ctcttggtgc cttcacattt gcatctcgtg atgcccttct
     2041 gtttactctc gcctcacaga aatctaagga ctccctggcc atcccttagg cacaccagag
     2101 gtgttccctc tggccactct tggctactca cgtgtcacag cagcccacac caacaggatg
     2161 cagacaggta caatggaagc agtccttgcg gagccaagat tcacccagag tgaaatattt
     2221 accctcgtac tggcagggag ctagggaagg atgagaactg tgttagcaga tgagaactgg
     2281 agtgttggca gaagtctctt ctggtctggg gtagaggata atccatgcat actacccctc
     2341 catacagcct tcctgtttca caggttgaag gcctgaatgt tctaacccaa ggttgggcat
     2401 ctctaagcct tcaccactgc ccttcccttt ccctttagca tcagcccacc ttaccttgag
     2461 cttggaagta gcacttgctg ttgactcctg ggtgctgcag gaccagggac accaccaagc
     2521 agatgaccct ccagcctccc aggatcccct tggcctgtcc agcccagagt atccttagag
     2581 ccattcctgc agctcagctc tcagacccgc cttggcttct gttcagattc ctctggtttt
     2641 atcccctcgc tcttcttgcc ttgctcctgg cctcctgagt ttctctctcc ttggactcct
     2701 gactcacacc atggcagtgc cctctgctct tacaggctgg gaatgtttat aaagtgggga
     2761 ccctggtccc ctgctgagta gagccggaca ggctgtaact ctgtttcctg aggtgagggc
     2821 atgaaaacaa gaggtccggc ttttaacaag ctgtgagagc tgattcatgc ccccacacag
     2881 ctaggaggag ggaggcagcc atgcaagggg cactggactg ggcactaata cagccaggag
     2941 gggaggggtg aaggccccag gtggtcccca gatctccttg acctgcagag aggaagcatt
     3001 ccatcaaccc tccttccacc agcaacaggg gtgtgtgtgc tgggatccct gcctgaaccg
     3061 gagggaggca tttcctgggg atggcgaatc ctgtgcccca gccaaaccaa ggagctgcag
     3121 aagggtgcaa ctgccagtct ccaggagagc aggcaggcat ctggaatgga gagtttcctt
     3181 cacatcccag ggcagggttt ccctggtgca ctgtgaggaa aggggttcat ccataggcac
     3241 cccaaatttt gcatttttac cccaagtgga caacagatgc aagatcgtcc cattcctgac
     3301 agtgcttctg caccccccca agagaagtat ctccaaatac cttaatggat gtcaccccac
     3361 ttcacagaga tgccccctct ttcctcatga tgggagcttt ctaacgtccg agtttccaca
     3421 ggctctgcag gagtgctggg cttcagtgcc tgcccactgg ctgtctggcc atgcacaggg
     3481 cacttcacct gccaccccgc ttcctcaccg tattgagagt agacgtgcca gctcttgggc
     3541 ttgtgagata gatagcatgt gggatgttct taacaccatt gctggcccat ggccctcaga
     3601 aaatagccgc tgacggaggc taaagctcag gcaaaaacga tgttctttcc tctggatggc
     3661 agtaagtagc tctgtacagc tgagggcttc tggtgtgggc tcccgggtcc agcttctgcc
     3721 ttcacatgta tgcttcaagg tatccctact gcctccttca aagacctgtg tggtcctggg
     3781 agcattttag atccagtctt tgacatgtgg gttgaaaggt ggtgttgaca aatctgtgtt
     3841 tccatacctt gggaagaggg atcatgccgt accctccctt cagctaactt taggactctt
     3901 tttcttattt ggattctgac ttccttctca tcccctcatg tgcactccaa gtctcctttg
     3961 tgactacttt gtgaccctgg acttttgttc taccttccgg agtccccagt gttgttcggt
     4021 tcttcctttc ctactcctag gacgtttact gcggttttcc atccatgcct gcggtcccgt
     4081 tcacccctcg ttcacccctc gctttactca tctagcacag cagatacatc ttactaatgg
     4141 cagacctttt caggagcccc ctgcttgtca cctcttcatt cagctgctac tgtcacgtca
     4201 gcccacctct gggatgcctt ttgcattggc tagggatgta gttgggtgac agtgtttacc
     4261 atctagtgtc ccaggttcca cccctaacac cctccccccc attaagtgga agaaaacaag
     4321 tgttttttca gattgatatc aagataagaa caaaggaaaa cttaggacac ctaggtaggc
     4381 tcctgggagc ctggagggga gaacacagct tcgactcctt gctgtcttgg ctggagaagg
     4441 gattagcagt ctgcttagta gtgagctctg ccactgcctt gggggaaccc acctgaaggc
     4501 cgagcataga ccattttctg cagtagctcg acacaatgca cgtgaggcta gagatcccgg
     4561 aggcagaaga ggcactggaa gtgagacctg gtaggcatta gtgtctgaga ggtgcgggtg
     4621 aaggcgtgta gctgtgggga cttctggaag gaggcagagg ccgagcagaa ttcctctctg
     4681 aggtcatagg gcagtgggga actggctgat gacctggcag tggtgtgtgc agaggcatca
     4741 gtggttagag cccagcccac tgagtcccag gggagtagcc tttggggcaa ggggcaggac
     4801 agggtcaggg tgagggttgg cacaggccac ctatgcaggg acaaggaaaa catccgccag
     4861 cgctgggcca gactgttcca gcagtgcagg caggtgcgca cgcagggcaa ggaagtgagc
     4921 acattccggg gctgagtcag cccaacccgg cttgctttgc ccaaatggga cagagcactg
     4981 tgtttggaga tggtggctca gggaggtttg gggacaagag cccaaagaaa tcatgagagg
     5041 gactgctttc tgcccagctg gcaacaaact gcagagcccc taaattcata gctcgagact
     5101 gagtaggcag tgaggcaggc aggttagagc tgagaggctt gagaggaagg gcagaggaaa
     5161 ggccctccag agtcttgctg gagtggagga tccagggaag ccgaggcagg tggtgaggcc
     5221 tctgagaata aggagttcac catccatgca agtcagaggg tatgacagcc cagctaggtc
     5281 tgccaggggc cggtgtgaag gaagggctcc agggagtgtc aggggttaga ttatttggat
     5341 ctttgcagta cttcctgggt ctaaagaggc tttctgtgct ggaatagttg ttcgggtttc
     5401 tcaggtaaac tggagccatg ttggtctatg accacaaaga tagtggatgg tgtagtaaca
     5461 aagtcctgtg tctcccatta cccaacctgc cacccactac ccctcgccca agcccccaaa
     5521 ggaaggctat cactgatagg gctgtgtcca tatacctatc ccaacagaga agcaggagtg
     5581 ttgccccaag tatgaggacc aggtggggct atagagtgag accctatttt aaaaacaatt
     5641 tgctcttact aaaccttaaa attttgaata aagattgaaa aatca
//
