LOCUS       NM_001044263            1665 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus regulatory factor X-associated protein (Rfxap),
            mRNA.
ACCESSION   NM_001044263 XM_001058561 XM_574942
VERSION     NM_001044263.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1665)
  AUTHORS   Peretti M, Villard J, Barras E, Zufferey M and Reith W.
  TITLE     Expression of the three human major histocompatibility complex
            class II isotypes exhibits a differential dependence on the
            transcription factor RFXAP
  JOURNAL   Mol Cell Biol 21 (17), 5699-5709 (2001)
   PUBMED   11486010
REFERENCE   2  (bases 1 to 1665)
  AUTHORS   Masternak K, Barras E, Zufferey M, Conrad B, Corthals G, Aebersold
            R, Sanchez JC, Hochstrasser DF, Mach B and Reith W.
  TITLE     A gene encoding a novel RFX-associated transactivator is mutated in
            the majority of MHC class II deficiency patients
  JOURNAL   Nat Genet 20 (3), 273-277 (1998)
   PUBMED   9806546
REFERENCE   3  (bases 1 to 1665)
  AUTHORS   Durand B, Sperisen P, Emery P, Barras E, Zufferey M, Mach B and
            Reith W.
  TITLE     RFXAP, a novel subunit of the RFX DNA binding complex is mutated in
            MHC class II deficiency
  JOURNAL   EMBO J 16 (5), 1045-1055 (1997)
   PUBMED   9118943
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098816.1.
            
            On or before Aug 24, 2006 this sequence version replaced
            XM_574942.2, XM_001058561.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098816.1, EV773900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..1665
                     /gene="Rfxap"
                     /gene_synonym="Rfxapl1"
                     /note="regulatory factor X-associated protein"
                     /db_xref="GeneID:499617"
                     /db_xref="RGD:1565351"
     exon            1..567
                     /gene="Rfxap"
                     /gene_synonym="Rfxapl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..786
                     /gene="Rfxap"
                     /gene_synonym="Rfxapl1"
                     /note="regulatory factor X-associated protein-like 1"
                     /codon_start=1
                     /product="regulatory factor X-associated protein"
                     /protein_id="NP_001037728.1"
                     /db_xref="GeneID:499617"
                     /db_xref="RGD:1565351"
                     /translation="MRQDEAAADSALRPGLAGSEAAADAEDEAGEDDADLLDTSDPAG
                     GGESAASPEELEDEDAEGGGAARRRGSKTCTYEGCRETTSQVAKQRKPWMCKKHRNKM
                     YKDKYKKKKSDQAQGSGGPAAASTGNVKLEESTENILSIVKQRTGSFGDRPARPTLLE
                     QVLNQKRLSLLRSPEVVQFLQKQQQLLNQQVLEQRQQQFPGAPV"
     exon            568..675
                     /gene="Rfxap"
                     /gene_synonym="Rfxapl1"
                     /inference="alignment:Splign:2.1.0"
     exon            676..1639
                     /gene="Rfxap"
                     /gene_synonym="Rfxapl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccggacgta cggcggatcg cttgtgaagt cccgttgtgt ttttcaagtg ctgacgggcc
       61 gcggtggcgg accctggctc tggcggcatc acggaggcgc aagctgtgtc cgagggctcc
      121 aggccgggca ccaccagtcc ccggacggcc cctcccgtga cggtgctggt gatgcgacag
      181 gacgaggccg cggcggacag cgctctgagg ccaggtctag cggggagcga ggcggcggcg
      241 gacgccgagg atgaggcggg ggaggacgac gccgacctcc tggacacatc ggacccggcg
      301 ggcggcggcg agagtgcggc cagccccgag gagctggagg acgaggatgc cgagggtggc
      361 ggcgcggcgc gcagacgagg ctcgaagacc tgcacctacg agggctgccg cgagaccacc
      421 agccaggtgg ccaagcagcg taagccctgg atgtgtaaga agcaccgcaa caagatgtac
      481 aaggacaagt acaagaagaa gaagagcgac caggcacagg gctctggtgg ccccgccgcg
      541 gccagcacag gcaatgtcaa actggaggaa agcacagaaa acatactctc cattgtcaaa
      601 cagagaacgg gatcttttgg ggatcgccct gcaagaccta ctctattaga gcaagtgtta
      661 aatcagaaaa gactgtcatt actaagaagt ccagaagttg tccagttttt acagaaacag
      721 cagcagctac tcaatcaaca agttttggag caaagacagc agcagttccc aggagctcca
      781 gtgtgagggc ttaccaggaa gtctgctgtg ctttgcctga ctgatggata ggtgtgcctt
      841 tagaccaaga cgatgccctg ataatcaggc gttggtggtg cacacctgga agccctgaac
      901 ttggaaaact gagccaagag gatcccagat tcaaagccag cctgggctac atagcaagtt
      961 cctttctcaa aaaagagaga gagagagaga agaaaactat ttcctgttaa gtgtgcgtgt
     1021 gcatttgagg ataataagta ttgagttttt gcatttcatt gtatcatatc accctgagtc
     1081 taagtctcct gtatggtctt taatgttttt cttcagttct gctcactgaa gctaaggagg
     1141 cagttacttc ctgtggaagt cataaaggta atagtaatat cacatcacct ggtgctgtgc
     1201 tcctcatccg gacgcactgg gaaggaatgg atgttgggtt gtcgcagtga cctggagcta
     1261 gctaggctgt aatgaagggc cgggaatcct tactcagccc accaaggcca gggcaggttt
     1321 ggttttctta tagtcattct taacgttcgt cataaaggag atcccgaagg gagagcaacg
     1381 ctcacgtatg acaaggccaa atgtgtcagt ggattgaccc ctaagttctg aagtgtaagc
     1441 gacgttaaac tcagagggct atgggcgcag ttcagccttg ctgcgccccc ctagcctgtg
     1501 cgaggccctc tgcctgccca ccctcaccac catataaaca aatgcaggga agagagtgac
     1561 ggtcttcatt gtgttgttcg tgtgtctgaa aaagaccttt gccaaaatta tccattaaag
     1621 ggcagctgtt aaactttgaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
