LOCUS       XM_039094490            1104 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus regulatory factor X-associated
            ankyrin-containing protein (Rfxank), transcript variant X6, mRNA.
ACCESSION   XM_039094490
VERSION     XM_039094490.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1104
                     /gene="Rfxank"
                     /note="regulatory factor X-associated ankyrin-containing
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 43 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:306353"
                     /db_xref="RGD:1311390"
     CDS             340..972
                     /gene="Rfxank"
                     /codon_start=1
                     /product="DNA-binding protein RFXANK isoform X5"
                     /protein_id="XP_038950418.1"
                     /db_xref="GeneID:306353"
                     /db_xref="RGD:1311390"
                     /translation="MEPTQVAENLIPNQQSLAPDLEDPEDRRDESPDSSDTVVLSLFP
                     CTPDAVNPEADASASSLQGDNLVNKPDERGFTPLIWASAFGEIETVRFLLDWGADPHI
                     LAKERESALSLASMGGYTDIVRLLLDRDVDINIYDWNGGTPLLYAVRGNHVKCVEALL
                     ARGADLTTEADSGYTPMDLAVALGYRKVQQVMESHILKLFQGTLGPADPE"
ORIGIN      
        1 cgcctctgta ctcagaggcc tcagcggaag ccacgctcct ccctccattc ttaaagggct
       61 agaagccgat tcgggttttt attttttatt ttttggtact tttgcaggac aggggtgcgc
      121 aggcgcagtg gaggagttct cctgtaggaa tagtcctggc gtattaagtt gctgctctat
      181 gtcccagcag aagaagctag aggactgggc gtccggtcac caacttgctc ctcacgagat
      241 ctactggact agaaaagttt gtgaacagag cttcccgagt tttgggagag ccaggctggc
      301 agcgtaaggg aacggaggag gctggaggga gcttcctcga tggagcccac tcaggttgca
      361 gagaacctca tcccaaacca gcagtccctt gctcctgacc tagaggatcc tgaggaccgc
      421 agagatgaat ccccagatag ctctgacact gtcgtcctca gtctgttccc ctgcacccca
      481 gacgctgtga atcctgaggc agatgccagt gcatcctcac tacagggtga caacctggtc
      541 aacaagccgg atgaacgtgg cttcaccccc ctcatctggg cctcagcctt tggagaaatt
      601 gagacagtac gcttcctgct agactggggt gctgaccccc acatcctggc caaggagcgg
      661 gaaagcgctc tgtcgcttgc cagtatgggt ggttacacgg acatcgtgag gttgctgctt
      721 gaccgtgatg tggacatcaa catctatgac tggaatgggg ggacaccact gctctacgct
      781 gtgcgtggga accatgtgaa gtgtgtggag gccttactcg cccgaggtgc tgacctcacc
      841 acagaggccg actctggcta caccccaatg gacctcgccg tggccctagg ataccgcaaa
      901 gtgcaacagg tgatggagag ccacatcctc aaactgttcc agggtaccct ggggcctgcg
      961 gacccggagt gaagacagcc tgttgggaac ccaggcactc agggacaaac cagtcagccc
     1021 acaactggct tggaaggcag ctcctggaca gtggtgggaa gagccctccc caacaggaac
     1081 caataaatct gtgcagaact tgaa
//
