LOCUS       XM_039094488            1266 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus regulatory factor X-associated
            ankyrin-containing protein (Rfxank), transcript variant X3, mRNA.
ACCESSION   XM_039094488
VERSION     XM_039094488.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094488.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1266
                     /gene="Rfxank"
                     /note="regulatory factor X-associated ankyrin-containing
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 ESTs, 1 long SRA read, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 37 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:306353"
                     /db_xref="RGD:1311390"
     CDS             346..1134
                     /gene="Rfxank"
                     /codon_start=1
                     /product="DNA-binding protein RFXANK isoform X2"
                     /protein_id="XP_038950416.1"
                     /db_xref="GeneID:306353"
                     /db_xref="RGD:1311390"
                     /translation="MEPTQVAENLIPNQQSLAPDLEDPEDRRDESPDSSDTVVLSLFP
                     CTPDAVNPEADASASSLQVPAASVWTPLAQAQTPGEQALPLLAGSFLKHSTTLTNRQR
                     GNEVSALPATLDCDNLVNKPDERGFTPLIWASAFGEIETVRFLLDWGADPHILAKERE
                     SALSLASMGGYTDIVRLLLDRDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL
                     TTEADSGYTPMDLAVALGYRKVQQVMESHILKLFQGTLGPADPE"
ORIGIN      
        1 cgcatgcgcc tctgtactca gaggcctcag cggaagccac gctcctccct ccattcttaa
       61 agggctagaa gccgattcgg gtttttattt tttatttttt ggtacttttg caggacaggg
      121 gtgcgcaggc gcagtggagg agttctcctg taggaatagt cctggcgtat taagttgctg
      181 ctctatgtcc cagcagaaga agctagagga ctgggcgtcc ggtcaccaac ttgctcctca
      241 cgagatctac tggactagaa aagtttgtga acagagcttc ccgagttttg ggagagccag
      301 gctggcagcg taagggaacg gaggaggctg gagggagctt cctcgatgga gcccactcag
      361 gttgcagaga acctcatccc aaaccagcag tcccttgctc ctgacctaga ggatcctgag
      421 gaccgcagag atgaatcccc agatagctct gacactgtcg tcctcagtct gttcccctgc
      481 accccagacg ctgtgaatcc tgaggcagat gccagtgcat cctcactaca ggttcctgca
      541 gcatctgtct ggacaccctt ggcacaagcc caaacaccag gggaacaagc ccttcctctc
      601 ctcgcaggaa gtttcttgaa gcactccaca accctcacaa accggcaacg tgggaatgag
      661 gtctcagctc tgccagccac cctggactgt gacaacctgg tcaacaagcc ggatgaacgt
      721 ggcttcaccc ccctcatctg ggcctcagcc tttggagaaa ttgagacagt acgcttcctg
      781 ctagactggg gtgctgaccc ccacatcctg gccaaggagc gggaaagcgc tctgtcgctt
      841 gccagtatgg gtggttacac ggacatcgtg aggttgctgc ttgaccgtga tgtggacatc
      901 aacatctatg actggaatgg ggggacacca ctgctctacg ctgtgcgtgg gaaccatgtg
      961 aagtgtgtgg aggccttact cgcccgaggt gctgacctca ccacagaggc cgactctggc
     1021 tacaccccaa tggacctcgc cgtggcccta ggataccgca aagtgcaaca ggtgatggag
     1081 agccacatcc tcaaactgtt ccagggtacc ctggggcctg cggacccgga gtgaagacag
     1141 cctgttggga acccaggcac tcagggacaa accagtcagc ccacaactgg cttggaaggc
     1201 agctcctgga cagtggtggg aagagccctc cccaacagga accaataaat ctgtgcagaa
     1261 cttgaa
//
