LOCUS       XM_039084546            4139 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus regulatory factor X8 (Rfx8),
            transcript variant X1, mRNA.
ACCESSION   XM_039084546
VERSION     XM_039084546.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086027) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4139
                     /gene="Rfx8"
                     /note="regulatory factor X8; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 3 ESTs, 107 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:501127"
                     /db_xref="RGD:1560724"
     CDS             2189..3982
                     /gene="Rfx8"
                     /codon_start=1
                     /product="DNA-binding protein RFX8 isoform X1"
                     /protein_id="XP_038940474.1"
                     /db_xref="GeneID:501127"
                     /db_xref="RGD:1560724"
                     /translation="MAEAVPASPAGGRGLHRGIIQWLVDNFCICEGFSVPRCLMYEIY
                     VETCGQSAQNQVNPATFGKLVRLVFPDLGTRRLGTRGSARYHYDGIYIKKSSFFYAHY
                     CYLLGKKSCHSGDLVAFGKSPDFNNVLQQEETCESHSPIKTDPMGSPVSPFRRCPFWE
                     QELANKYSCKLVVFLADEYCNYCRDILQYVRNQELEKVEDLITSFWKSLQQDTVMLLS
                     LPDVRQLFGCYDMQLYKGLEDTLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFP
                     AILQISKLKEVTGFVKRLRRKTYLSNMAKTMKMVLKNSRRVGLLKSDLRAIIREGTLD
                     ISKKVLEGDSGHEEEPESHTEMKCLGCLISLLETSTDLAELLNCVSSNLQALVFQPSK
                     SKEEFIKLAASFQLKWNFLLTAVSKAMTLSHRDSFGAWHLFHLLLLEYVIHILESCME
                     EEEEEEDLGSLQDLLSDDQFLTQPDQALFHSLDSLPASECASRNVESPQVTLKHMSQS
                     CSPMGVSSMVLQVLGFLVDTATGNKLIQVLLEDKATESAVKLSLPVGQEALITLSNGQ
                     RFVIHISDVPQSSENTYCRKSDSTMPGGLLE"
     polyA_site      4139
                     /gene="Rfx8"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tatttattat atataagtac actgtagctg tcttcagata caccagaaga gggcatcgga
       61 tctctttaca gatggttgtg agccaccatg tggttgctgg gaattgaact catgacaaag
      121 agcagtcggg tgctcttaac cgctgagcca tctctccagc ccccctttca tggtcttaat
      181 gaatctctgc cctgctgttg taagtcgctt ttaaataggt gtgtttgttt caaaaggtgg
      241 tcagtgtgta tcacataaaa cattttccca tttactcaac aacattgagt atatacacac
      301 tgtccaacag agacaatcta tctccagagg ttttcattgt gcaagaccag gggtcttcaa
      361 tcctgatgct tcaccctttt aagtagaaaa aattattttt gccactactt cataattttg
      421 ttaccatcgt gagtcataat gtaaatatct gtgttttctg gtggtcttcg gcaaccccca
      481 tggaggggtt cacaacccac aaagtgagaa ccactgtgct agactgaaac tccaccgtga
      541 tagatacaaa ttccctaatt aataaatgcc cttcccaaat acagctagac aactaccatt
      601 tattttctct gagtttgatg accagatgtg taaggaggag caccctttgg ggcatccctg
      661 gattagtgta agagttttaa aatcctacca gattgtagca cgtgtctgag tctcattact
      721 ttttcagaag gaatactgga ttatggttgg gatatgccac atcttctttg cccatctgtc
      781 tgtccgtgac acttggatgg cgtccccatg gatggtgttg ctatgaactc ggggctgcac
      841 acacttcagt gcttgctctc agtttgagtg catctagaag tgggcaccac ctggtccctt
      901 gctaaccccg gttagcagag cagtcagtgt ttcccatagc aatggctcca ctttaaactg
      961 ccagcatcag gaagcaaggg tcccagtctt ctctccctgt tcatcaacat ttgctttcta
     1021 tttttaaaag tcattccaag gctggagaga tggctcagca gttaagagca ctgactgctc
     1081 ttccagaggt catgagttca aatcccagca accatatggt ggctcacagc catctgtagt
     1141 aggatccaat gccctcttct ggtgcgtctg aagacagaga cagcgtactc acataaaata
     1201 aaataagtct taaaaaaaaa aagtcattcc attacagcct gggcttgcat ctccttgtca
     1261 tcttgagtct atcatctctt cagatgcttg gtggacagct gttcattcat tcataagtaa
     1321 gccttcactc attcgtaagt tgagggttga cgttagcaag tatgtttttc atctggatta
     1381 agacgtcctt gtaaccagtg agcagccaat gtcatgtccc cacggttgga ctcttgacgt
     1441 gtttggtcag tacctgtcca gtagcactgg atacaattga ctatttcccc aagaaagatg
     1501 tgagcttctg agacagctgg cccctcagtc acaaaacagt catgttaaca cacacttggg
     1561 tccacagggc aagaaaggcc ttgtcctgac tgcaggcttg gaggaatcag tctgcagcag
     1621 cggccaccgg ccaccacctt gacttcaagc ttcacctggg gtccctcttc ctgggattct
     1681 gttttcagct tctaggccac ctgggacaca gcctctggtc cagaggagaa cttttcccag
     1741 gccaacttcc ctcccccgtc gcacccccat ccaggcccca ttatattgaa cctcgtgagg
     1801 aaggaggtgt tggctagaag tcaatatttt tcaaagtgcc aaaataatca agtaattccc
     1861 aagtgctgac cagttacaga cccttgatga tcaaacactg ccagtgaact ggccggaagc
     1921 atatacttgg gtatttctct gctgtttctt agcttgatcc gttagtccaa ccaaagttgg
     1981 ccagggcggg gaagggcggc ggcatgtggg gtgcctctct ggcctttggt gggggtgggc
     2041 gtggaggcga ccccaacccg cacctctgag tgcagggcgt gtgcccagca tcctcccccc
     2101 tggctgcgcg cgccccccgc gcgcctccgc tctaaagtaa acacggcgga gaggaccggt
     2161 gccccgctcg ctgcccgccg ggcgagccat ggcggaggcg gtgccggcct cccctgcggg
     2221 cggccgcggc ctgcaccggg gtatcatcca gtggctggtt gacaatttct gcatctgtga
     2281 agggttcagc gtgccccgat gtctcatgta tgagatttat gtagaaacct gtgggcagag
     2341 tgctcagaac caagtcaatc cagcgacatt tgggaagctc gtgcgtttgg ttttccccga
     2401 tctgggcacc cggaggctgg gcacacgagg aagtgccagg tatcattacg acgggatcta
     2461 tatcaagaag agctccttct tctatgctca ttactgctac ctgctgggta aaaagagctg
     2521 tcacagtggc gaccttgttg ccttcggaaa gtctcctgat tttaacaacg ttctccagca
     2581 ggaagaaaca tgtgaaagtc actcaccgat aaagacggac ccgatgggct cacctgtgtc
     2641 tccattcaga agatgtccat tctgggaaca agagctggcg aacaagtact cctgtaagct
     2701 ggtggtcttt cttgctgatg aatattgcaa ctactgccga gacattttac agtatgtgag
     2761 gaaccaagaa ctggagaagg tggaggattt aatcacctcc ttctggaaat ctctgcagca
     2821 agacacagtc atgctcctgt ctctgcccga cgtgcgccag ctcttcggat gctatgacat
     2881 gcagctatat aagggcctgg aggacacgct gctcccggac ttcctggagg atgtcagtat
     2941 ccagtacctg aaatcagtcc ggctgttcag taagaggttt aaactgtggc ttctcggtgc
     3001 cctggagggt tttccggcca tcttacagat ctccaagctc aaagaagtca ctggatttgt
     3061 caaaagactc aggagaaaga catacctttc caacatggcg aagacaatga aaatggtcct
     3121 gaagaacagc aggagagtcg gcctcttgaa gtcagacctc cgcgccatta tcagagaagg
     3181 caccctggat atatcgaaga aggtcctgga gggtgactcg gggcacgaag aggagccaga
     3241 gagccacaca gagatgaaat gcttaggctg tttaatttct ttgctggaaa cctcaacaga
     3301 tcttgctgaa ctcctgaact gtgtgtcttc aaacctccaa gcgcttgtct tccagccaag
     3361 caaaagcaaa gaggagttta tcaagctcgc cgccagcttc caactgaagt ggaatttcct
     3421 tctcaccgct gtgagcaaag ccatgaccct gagccacaga gacagtttcg gtgcctggca
     3481 tctgtttcac ctgctgctgt tggaatacgt gatccacatc ctggagtcat gcatggaaga
     3541 ggaggaggaa gaggaggacc tgggaagcct ccaggacctg ctgtcggatg accagttcct
     3601 cacccagccg gaccaggccc ttttccactc tctagattct ctgccagcat cggaatgtgc
     3661 aagccggaac gtggagtcac ctcaggtgac actgaaacac atgagccaga gctgcagtcc
     3721 catgggtgtg agcagcatgg tcctccaggt gctgggcttc ctggtggaca ccgccacagg
     3781 caataagctc atccaggttc tgctggagga caaggctact gaaagcgccg tgaagctcag
     3841 ccttcccgtg ggacaagaag ccctcataac cctaagcaat ggacaaagat ttgtgattca
     3901 catatcagac gtgccccaaa gctcagaaaa cacctactgc aggaaaagcg actcgaccat
     3961 gccagggggc ttgctggagt agcgtgagga agcaggcttg aagttttaaa acacgtatga
     4021 agtcctaaag cttttgtatt gctctccgag agtttaatgt atataataga tgacgcattt
     4081 tatgtttgta attttgagga attgtatttg atcaaactat aaactaattt tgagaataa
//
