LOCUS       NM_001127490            7998 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus regulatory factor X, 7 (Rfx7), mRNA.
ACCESSION   NM_001127490 XM_001053787 XM_236392
VERSION     NM_001127490.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7998)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001127490.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.34496.1,
                                           SRR21887623.2221306.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-746               JAXUCZ010000008.1  82134747-82135492
            747-780             JAXUCZ010000008.1  82175049-82175082
            781-863             JAXUCZ010000008.1  82188514-82188596
            864-986             JAXUCZ010000008.1  82190218-82190340
            987-1103            JAXUCZ010000008.1  82204318-82204434
            1104-1188           JAXUCZ010000008.1  82207085-82207169
            1189-1396           JAXUCZ010000008.1  82208023-82208230
            1397-1692           JAXUCZ010000008.1  82211437-82211732
            1693-7998           JAXUCZ010000008.1  82213593-82219898
FEATURES             Location/Qualifiers
     source          1..7998
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..7998
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /note="regulatory factor X, 7"
                     /db_xref="GeneID:315804"
                     /db_xref="RGD:1308795"
     exon            1..746
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             586..4965
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /note="regulatory factor X domain containing 2 homolog"
                     /codon_start=1
                     /product="DNA-binding protein RFX7"
                     /protein_id="NP_001120962.1"
                     /db_xref="GeneID:315804"
                     /db_xref="RGD:1308795"
                     /translation="MAEEQQQPPPQQLDAHQQLPLSAPNPGVALPALVPGLPGTEASA
                     LQHKIKNSICKTVQSKVDCILQEVEKFTDLEKLYLYLQLPSGLSSAEKSDQNAMSSSR
                     AQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCDNLGYHPLSAADFGKIMKNVFPN
                     MKARRLGTRGKSKYCYSGLRKKAFVHMPTLPNLDFHKTGDGLEGVEPSGQLQNIDEEV
                     ISSACRLVCEWAQKVLSQPFDTVLELAHFLVKSHYIGTKSMAALTVMAAAPAGLKGIS
                     QPSAFIPTAESNSFQPQVKTLSSPIDAKQQLQRKIQKKQQEQKLQSPLPGESSAKKTE
                     GTTANGVANLPNGNPAILSPQPIGIVVAAVPSPIPVQRTRQLVTSPSPMNSSDGKVLP
                     LNVQVVTQHMQSVKQTPKTPQNVPASPGGDRSARHRYPQILPKPANTSALTIRSPTTV
                     LFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNAPLKHSASVSNATGTTEDSRSI
                     PQIKNGSVVSLQSPGSRASSTGGTSAVEVKMEPEGSSDEHPLQCQENAEGTKAPLATS
                     SALWGQKSNTDGTVSKPSNEGVTEVKTTKVCDQRAKCKSRCNETLPGISAGNNQSTVT
                     LSVATQNLPFTSTSSPSNGDSVNKDPKLCTKSPRKRLSATLQESQVPPVKKPIVEQLS
                     AVTTEGQKPGTVKKDQKVPHSGKTESSTAGAQPPNKVSLSVSSHIVEDQPLNPTLVAS
                     ESALEQQTTPSSSPDVKVKLEGSVFLLDRESNSDGSFNRNEWQQVTKDSDFISASCEQ
                     QQDISVMTIPEHPDIHDLEKSVWELEGMPQDTYSQQLHSQIPESSLNEIQAQSSDQLP
                     LQSELKEFESSVSQTNESYFPFDDELTQDSIVEELVLMEQQMSMNNSHSYGNCLGMTL
                     QSQSVTPGAPMSSHGSSSHFYHPIHSNGTPIHTPTPTPTPTPTPTPTPTPTSEMIAGS
                     QSLSRESPCSRLAQTTPVDSALGSSRHTPIGTPHSNCSSSVPPSPVECRNPFAFTPIS
                     SSMAYHDASIVSSSPVKPMQRPMATHPDKTKLEWMNNGYGGVGNSSVSGHGILPSYQE
                     LVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGRLTPVSPVQHQGATVNTNKQEGFAVPA
                     PLDNKGTNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRSNVTPFGSPVTPEVH
                     VFTNVHTDACANNIAQRSQSVPLTVMMQTAFPNALQKQTNSKKITNVLLSKLDSDNDD
                     AVRGLGMNNVPSNYTARMNLTQILETSPVFPSANSQNMIDSSTSVYEFQTPSYLTKSN
                     STDQISFSPGDNQAQSEIGEQQLDFNSTVKDLLSGDNLQTSQQLGGQVASDLTNTASD
                     FPSDIRLSSDLSGSINDLNTLDPNLLFDPGRQQGQDDEATLEELKNDPLFQQICSESM
                     NSMTSSGFEWIESKDHPTVEMLG"
     exon            747..780
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            781..863
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            864..986
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1103
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1188
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1396
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1692
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..7998
                     /gene="Rfx7"
                     /gene_synonym="Rfxdc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggctgctct gggctggcag ggcagcagcg gccgcggcgg cggggccggg agcgagcgag
       61 ggagcgagcg agcggctcgg gggagttcgg aggcgccagg cccccggggg agggcggccg
      121 gggaggcagg cccccgagag acctgtcggg ttggattttg gggccgaggg ggcgcctgac
      181 cactgacctc gttcttcaga cgccccccag ccccggccgc tgacgggggg ctgaggggcg
      241 ccgccatgcc tctgccgcgg tgacgcgcgg ggcggtaagg agaaccggga gaggaaccgt
      301 gacgagaacc gcaaggagaa ccgggagagg aaccgtgacg agagccgcga ggagccgcgc
      361 ggtctccccg gggatgtccc tcaggcggcc agagaaagcg actcactcga gccctggggt
      421 ataggcctag cttatccagc ttccttcctt cctcctcctc ctcttcctcc cctcctcctc
      481 ctcttccccc cctccccctc ctcctcccct cgtcgtcctc ccctccgcgt ctcttccctc
      541 acccttcccc gcgcccccat cttccctccc tcccctccag cagcgatggc agaggaacaa
      601 caacagccgc caccacagca gctcgatgcc catcagcagc ttcccctcag cgcccccaac
      661 cccggggtgg ctctgccagc ccttgtgccc gggctgccag ggacagaggc cagcgctctg
      721 caacacaaga tcaagaactc catctgcaaa actgtacaat ctaaagtgga ctgcattttg
      781 caagaagttg agaagtttac agacctagag aaactctacc tctaccttca actgccttct
      841 ggtctcagca gtgcagagaa aagtgatcag aatgccatgt catctagccg ggcacagcaa
      901 atgcatgcct tttcctggat tcgaaatacc ttagaggagc atcctgagac ttcactcccc
      961 aaacaagaag tctatgatga atacaagagc tattgtgaca atcttggcta ccatccatta
     1021 agtgctgctg actttggaaa aatcatgaag aacgtctttc caaacatgaa ggcacgccgt
     1081 ttgggcacta gaggcaaatc taaatattgc tacagtggac taaggaaaaa agcttttgtt
     1141 catatgccaa cactgcccaa ccttgacttt cataaaactg gagatgggtt ggaaggagtt
     1201 gaaccatctg ggcagcttca aaatattgat gaggaagtta tctcttctgc ttgccgtctt
     1261 gtgtgtgagt gggcccagaa agtgttaagc cagccatttg acacagtctt ggaattagcc
     1321 cacttccttg taaagagtca ttatataggc accaagtcaa tggcagctct gactgtgatg
     1381 gcagcagcac cagcaggact taaaggaatt tcccagcctt ctgcttttat acctacagct
     1441 gaaagtaatt cctttcaacc tcaagtaaag actttgtcat ctccaattga tgctaaacag
     1501 cagttgcaac ggaaaattca aaaaaagcag caagaacaga aactacagtc cccattacca
     1561 ggagaatcct cagcaaaaaa aacagaaggc actacagcca acggagtggc taatctaccc
     1621 aatgggaacc ctgcgatcct ttctccccag cccattggga ttgtggtagc agctgtccct
     1681 agtcccattc cggtccagcg gacgaggcag ttagtaactt cacccagtcc gatgaattct
     1741 tctgatggca aggttcttcc cctcaacgtg caggtagtca ctcagcacat gcagtctgtg
     1801 aaacagacac caaagactcc tcagaacgtc ccagccagtc ctggtgggga ccgttctgcc
     1861 aggcaccgct accctcagat cttacccaag ccagcaaaca ccagtgcgct caccatccgc
     1921 tctcctacga ctgtgctgtt taccagcagt cccatcaaaa ctgctgtggt acctgcgtca
     1981 cacatgagtt ctctaaatgt ggtgaaaatg acaacaatat ccctcacacc cagtaacagt
     2041 aatgcgcctc ttaaacattc tgcctccgtc agcaatgcta ctggaacaac agaggactcc
     2101 aggagcatcc ctcagatcaa gaatggttct gttgtttctc tccagtcccc tgggtccagg
     2161 gccagcagca ctgggggaac ctctgctgtg gaagtcaaaa tggaaccaga aggttcatca
     2221 gatgagcatc ctctgcagtg ccaagagaac gctgagggga ctaaagctcc tctggccaca
     2281 tctagtgccc tttggggaca gaaaagtaat acagatggaa cagtatcaaa accttctaat
     2341 gaaggagtca cagaagtgaa aacaactaag gtctgtgacc agagggccaa gtgtaaaagt
     2401 cgctgtaatg aaactctgcc aggcatctca gcaggcaata atcaaagcac tgttactctc
     2461 tcagttgcta ctcagaactt acccttcacc agcaccagct caccatctaa tggtgactca
     2521 gtaaataaag accctaaatt atgcactaaa agtccaagaa aacgactgtc tgctacactg
     2581 caagagtctc aggtgcctcc tgtaaagaaa ccaattgtag aacagctttc tgcagttact
     2641 accgaaggtc agaaaccagg cactgttaaa aaggaccaaa aggttccaca ttcagggaaa
     2701 acagaaagct caacagcagg tgctcagcct cctaacaagg tgtcactcag tgtcagctca
     2761 cacattgtag aggatcagcc cttgaaccct actcttgtcg ccagtgaatc agctctggag
     2821 cagcagacaa cgccatcatc gtctccggat gtaaaagtaa aacttgaagg gagtgtcttt
     2881 cttttggacc gtgagtcaaa ctcagatggc agctttaatc gtaacgaatg gcaacaagtt
     2941 actaaggatt ctgacttcat atctgccagc tgtgagcaac agcaagacat tagtgtgatg
     3001 acaattcctg agcatcctga catccatgat ttagagaagt ctgtttggga attagaaggg
     3061 atgccacagg acacatacag ccagcagctc catagccaga taccagaatc ttctctgaat
     3121 gaaatacaag cacagtcttc agatcagtta ccgttgcagt cggaactgaa agagtttgag
     3181 tcttctgttt cccagacaaa tgaaagctac tttccttttg atgatgaact tacacaagat
     3241 agcattgtgg aagagctggt gcttatggag cagcagatgt caatgaataa ctcccattct
     3301 tatggtaact gcttgggaat gacccttcag agtcagtcag taactccagg agctccaatg
     3361 tcatctcatg gttccagctc tcacttctat catccaatcc atagcaatgg cactccaatt
     3421 cacacaccta cacccacacc cactcctaca ccaactccga ccccaactcc aaccccaaca
     3481 tctgaaatga ttgctgggtc tcagagtctg tcacgggaga gcccttgttc caggcttgcc
     3541 cagacaacac ctgtggatag tgctttagga agtagccgac acacacccat tggtactcct
     3601 cattctaatt gcagcagtag cgtccctcca agccctgttg aatgcaggaa tccatttgca
     3661 ttcaccccaa taagctccag tatggcatat cacgatgcca gcattgtctc aagcagtcct
     3721 gtaaaaccaa tgcaaagacc catggccact caccctgata aaaccaagct tgaatggatg
     3781 aataatgggt atggtggggt tggtaactca tcagtttctg gtcacggcat tctcccaagc
     3841 tatcaggaac tagtagaaga tcgtttcagg aaacctcatg cttttgctgt gcccggacag
     3901 tcgtatcagt ctcagtccag acaccatgac actcattttg gtcgtttgac tcccgtctct
     3961 cctgtgcagc atcaaggtgc cactgtaaac accaacaagc aagaagggtt tgcagtcccc
     4021 gctcctcttg ataataaagg aactaattca tctgccagca gcaacttcag gtgccggagt
     4081 gtaagccctg ctgtccatcg ccaacggaat cttagtggaa gcaccctcta tcctgtgtct
     4141 aatatcccac ggtctaatgt aacccccttt ggaagtccag tgaccccaga agttcatgtt
     4201 ttcacaaatg ttcacacaga tgcatgtgcc aacaacatag ctcaaagaag tcagtcagtt
     4261 ccattaacag tcatgatgca gacagccttc cctaatgctc tgcagaagca aacaaacagt
     4321 aaaaaaatca ctaatgtttt gttgagtaaa ctcgattctg acaatgatga tgcagtgaga
     4381 ggtttgggaa tgaacaacgt gccctccaat tacacagccc ggatgaatct cactcagatt
     4441 ttggaaactt cccctgtttt tcctagtgcc aattcacaaa atatgatcga ttccagcact
     4501 tctgtttatg aattccaaac accatcttac ctcaccaaaa gtaatagcac cgatcagatc
     4561 agtttttctc ctggagataa tcaagcacaa tctgaaattg gagaacagca gttagatttc
     4621 aatagcactg ttaaagacct gttgagtgga gacaacctgc aaaccagcca gcagctggga
     4681 ggtcaggtag catctgatct caccaacact gcatctgatt tccctagcga catcaggttg
     4741 tcttctgacc tctcaggcag catcaatgat ttgaacacct tagacccaaa tctactgttt
     4801 gatccaggtc gtcagcaggg acaggatgat gaagccacac tggaagaatt aaagaatgac
     4861 ccactgtttc aacagatttg cagtgagtca atgaactcta tgacttcatc aggttttgaa
     4921 tggatagaaa gcaaggacca tcctactgtt gaaatgttgg gatgaattgt gttttatata
     4981 atatgtagca cactgtatct aaagacatat gtattgtatt tgtcttaatg gaagtgcctc
     5041 ccgcagcaga aacactatta attgtaacat tttaaaggcg tttgctgcag aagtggtttc
     5101 ttcagtagga aatggttaga cttgcctcag tgctggacac gtttctgaag acagtaggct
     5161 gtagagcaag tattaggttt taaattttat aatgtttccc atttaatcac atttgctagt
     5221 aaagaatcca gctttttacg agagcagtct gggtctttta ttttgtataa gttcatttta
     5281 actcatcagt tgatctacac agaaattaaa agaccatcca tttttagttg taggctgttt
     5341 tgttgttggc attatctttt aggtataaaa tcatagctaa ggtaaactgt aggcaagaga
     5401 gtcttcctta aaacagggat aatattcagg ttattataga tatttaagct tgaaacataa
     5461 agctactgta ggatgagaaa tctctgtagg actttctggg gcttcggtac catttactcc
     5521 cacaatgaag ggcttatgta ggggaaaata acggaaaaca aacttaattt aaggaaagta
     5581 aaagctgcac taaaatgttt aagaggaaaa ccagtagcca tttatttgtg acattgcatt
     5641 agtccagttt tagaaggtgg cttttaaaat ggagctctca agctcatgca ctctgcctct
     5701 ccctctctcc ccctcaccct actttccccc tttccctccc tcctatcttc cctcttcctc
     5761 tcttcttccc tcccctacac acacacaaca ttaagattta atagaagaaa tacaagcatg
     5821 ttagaaaatt gtctcatgtt ttattatttg cttgctgaga ttggagtgtt agaaggaaaa
     5881 tagaggactt tttttttttt tagtgtcttc accacagctc catgtacata ctgaaattct
     5941 actgaagaat taattatttt taatgctttt caccatggta tcctttagta atcagctttc
     6001 ctcctcctca gtttgctgac taactctttg cttctctgaa cgtagtaata cagttttatc
     6061 atgaatcaaa acaccaagca tgaaagagat aacattaaaa gcccagcaaa aaagcatttc
     6121 ttcccctgag gtctgacacc tcggatcttc atatctgata aaccaagagg atgtgatagt
     6181 acttgaagag aggagcattc attacgtgct tcacttattt attctgatgg acacagttgc
     6241 agacgaagca gagcactcag gatttgtttt aaagtgtttc tctgtggctc ccattttgtt
     6301 ttatgaatag tatttatgaa tttcatgtta acacaaaact agtaggcagc tccatttaag
     6361 tgagttttaa gataattttc agagatatta aagttaaccc taagttctta aaagataaca
     6421 tgagaacatt cactatactc tcctgactag ccaagctttt cttttacctt aattcaaaaa
     6481 taaatcagaa gacgacaaac tgaatattta acaaatagga tagaagggtt aatttaataa
     6541 gggtccgttg ttgagcagat ttgaaagtag ggtattaaca tattctaata aatcaatggt
     6601 gctagagttg gctcagaggt ttatctaagg atatgtccta gttactggca tatgtgtgtg
     6661 tttgctgtta atttgattta atgatttgtt agattttttc ttgatactag ttatttcttc
     6721 actgtacatt gagatacagc actactgcac accaaagtat gtaataccca aaggagactg
     6781 tgtgatttct tgtaacaaat gatgggagtc tttctcagtg agatactctg aagaggagac
     6841 tctgaggcca ttctaatccc ttgtttacac tgttagcttc ctactaatat aaaaataatg
     6901 gaaatctttt tttgataaaa aaaaaaaaag tatagagact ggaggatttt tacccctcgc
     6961 cccctgtaca gtattgcagc aaactcttta aatttggctg aattcgtcca gcaaactttt
     7021 tggggttcat attattgcac taaatttgtt gaacctgtgg taggcacatc tcttaggata
     7081 aatgcaacca gtacagtcca cagattaaaa tttttaaatg tgtttcatta tgaaaagaca
     7141 aaatatcatc aaagtgacag atgaaattgt cttatgtagc aatgtgcact gatctcaatg
     7201 agatatttct atttcttatt ctcttacacg agaatattac agcaggaaga attaagttta
     7261 gtttgcttca ccatgttaat acatgatcac aagatgtgca tgagtgttct tgacttatct
     7321 tgtacagtac taggtaatcc tgtaaccact ttttttcccc tcttggctgt attgaaactg
     7381 gctctgtgtt aaccaggtga gcatagttat tcacaggtta ttttgcttct tttaatgttt
     7441 actaattctg cttagttgtt aactatgttc ttttcttggg atttttttca ttgttttgac
     7501 gtttaaaaca ttttgcatac tgttttatca tgataagact tcatgaagta aataattttg
     7561 catataattg caataagcac tgacttttga actgagaaag aaggagcgtg ttttgtgcag
     7621 tgcatctgag gttcagataa cagtcttgta ctacagcgtg cttactacac cagaggtgac
     7681 aaaagcaagc cctgtcgtgt gtttccttta gtgcagagtc agaccctggt gctttgttgt
     7741 ctgttgtacc tgctgagatt acagtagttg agcatcgcac agtagcattt cagttctctt
     7801 tttttattaa aagtgctcaa attgtttttt aaatgttttc aagaacaatt aaaaacattt
     7861 tatattatac tgactggatg ttaagatgat ttattggatg tatttttata gacaatttgc
     7921 cattttataa atatgtacat gatgctgtat tttccttgaa ctggtgaaat gggggaggac
     7981 ataaaaatga tgcaaggc
//
