LOCUS       XM_039080074            2879 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus regulatory factor X4 (Rfx4),
            transcript variant X2, mRNA.
ACCESSION   XM_039080074
VERSION     XM_039080074.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080074.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2879
                     /gene="Rfx4"
                     /note="regulatory factor X4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     9 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:500818"
                     /db_xref="RGD:1562092"
     CDS             606..2879
                     /gene="Rfx4"
                     /codon_start=1
                     /product="transcription factor RFX4 isoform X2"
                     /protein_id="XP_038936002.1"
                     /db_xref="GeneID:500818"
                     /db_xref="RGD:1562092"
                     /translation="MWNQGREKRDWERMESKAWARDGGYRQRRPWQPHSTESWIERCL
                     NESENKRYSSHTSLGNVSNDENEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRS
                     ALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESS
                     QYYDVMYSKKGAAWVSETGKREVTKQTVAYSPRSKLGTLLPDFPNVKDLNLPASLPEE
                     KVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGV
                     CDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFEL
                     SRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSR
                     DEHRRLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFL
                     LMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKG
                     EGSTAEAQEEIILTEATPPTPSPGPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTT
                     GAMQSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPSSSVTHRIPVYSHREEHGYTG
                     SYNYGSYGNQHPHPLQNQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEPCLM
                     SSTPRLHPTPVTPRWPEVPTANACYTSPSVHSTRYGNSSDMYTPLTTRRNSEYEHMQH
                     FPGFAYINGEASTGWAK"
ORIGIN      
        1 tcaggccatc tgtagaaagc cacagagagc gcttaggtgg ctccttagaa cattggagta
       61 agtgtgaagt tctaccctgg gccactcagg gcctacgtgc tccagcaatt cctccacacc
      121 tccgacttcc ccaccacaat gtctcctcgc tctccaagcc cattcctgcc ttgggccttt
      181 accctccagt gtcaccttct cagacctgca gttaataccc ctgctactac ccgctatccc
      241 atctcgtgcc tcgtagttac cactcttaac ggctctgaag tcctcccatt tgtctgtttg
      301 gctctgtttc cactgtcgga cacaggtccc ctgagtcagg accttcttgg tcttgttcat
      361 cactaagggc tttagcctag cgcagagtag gcaccccatc cgtatttggt gaccatggga
      421 aaaaaaaagg caaacacggg gttggggctg tctttgtggt tcagcccctt cctggataga
      481 acccaggggc ccctgggcta gggcctgtgg ggttgccatg gtaaccactg actgacctga
      541 ggagcccttt ggagaggcca cagctgctgc ctgctagggg gtccaggttc tgtgtgtcgc
      601 caccaatgtg gaaccaggga agagagaaga gggactggga gagaatggag agcaaagcat
      661 gggcccgtga tggaggttac agacagagga ggccatggca accccattcc accgagagct
      721 ggattgaaag atgcctcaat gaaagcgaga ataaacgcta ttccagccac acatctctgg
      781 ggaatgtgtc taatgatgaa aatgaggaaa aagaaaataa cagagcgtcc aagccccact
      841 ccacgcctgc caccctgcaa tggctggagg aaaactatga gattgcagaa ggcgtctgca
      901 tccctcgcag tgccctctac atgcactacc tggatttctg tgagaagaac gatacccagc
      961 cagtcaacgc tgccagcttc gggaagatca taagacagca gtttcctcag ctcaccacca
     1021 gaagactcgg gaccagagga cagtcaaagt atcattacta tggtatagcg gtgaaggaaa
     1081 gctcccagta ctatgatgtg atgtactcaa agaaaggggc tgcctgggtg agcgagacgg
     1141 gcaagagaga agtgaccaag cagacagtgg cgtattctcc ccggtccaag cttgggacat
     1201 tgctgccaga ctttccaaac gtcaaagacc taaatctgcc agccagtctt cctgaggaga
     1261 aggtgtctac ctttattatg atgtacagaa cgcactgtca gagaatactg gacactgtaa
     1321 taagagccaa cttcgatgag gttcaaagtt tccttctgca cttttggcaa gggatgccgc
     1381 cccacatgct gcccgtgcta ggctcctcca cggtggtgaa catcgtgggc gtgtgcgact
     1441 ccatcctata caaggccatc tccggggtgc tgatgcccac agtgctgcag gcattgcccg
     1501 acagcttaac tcaggtgatc cggaagtttg ccaagcaact ggatgagtgg ctgaaagtgg
     1561 ctctccatga cctcccggaa aacctgagaa acatcaaatt tgaattatca agaaggtttt
     1621 cccaaatcct gagaaggcag acatcgctga accatctgtg ccaggcttct cgaacggtga
     1681 tccacagtgc agacatcacg ttccagatgc tggaggactg gaggaatgta gatctgagta
     1741 gcatcaccaa gcagacgctc tacaccatgg aggactcccg ggatgagcac cgcagactca
     1801 tcatccagtt gtaccaggag tttgaccacc tgctggagga acagtccccc atcgagtctt
     1861 acatagagtg gctggatacc atggtagacc gatgcgttgt gaaggtggcg gccaagagac
     1921 aagggtccct gaagaaagtt gcccagcagt tcctgttgat gtggtcttgc tttggtacga
     1981 gggtgatccg ggacatgacc ttgcacagtg cacccagctt cgggtctttc cacctaattc
     2041 acttgatgtt cgacgactac gtgctctact tgctagagtc tctgcattgt caggagcggg
     2101 ccaacgagct gatgcgagcc atgaagggag aaggaagcac tgcagaagcc caggaagaga
     2161 ttatcttgac agaggctacc ccaccaaccc cttcaccagg cccatcattt tctccagcga
     2221 aatctgccac atccgtggag gtgccacctc cctcctctcc cgtcagcaac ccatcccctg
     2281 agtacactgg ccttagcaca acaggagcaa tgcagtcata tacgtggtca ctaacgtaca
     2341 cagtgacgac agcggctggg tcgccggctg agaactccca acaactaccc tgtatgagga
     2401 gcacccacgt gccttcttcc tctgtcacac acaggatacc agtctactcc cacagggagg
     2461 agcatgggta cacgggaagc tataactacg ggagctatgg caaccagcat cctcacccac
     2521 tgcagaacca gtatccagcc ctgcctcatg acacagccat ctctgggccg ctccactact
     2581 ccccttacca caggagctct gcccagtacc ctttcaatag ccccacttcc aggatggaac
     2641 cttgtttgat gagcagcact cccaggctac atcctacccc agtcactccc cgctggccag
     2701 aggtgccgac agccaacgca tgctacacaa gcccgtctgt gcattccacg aggtatggaa
     2761 actccagtga catgtacacc cctctgacca cgcgcaggaa ttctgagtac gagcacatgc
     2821 aacactttcc tggctttgct tacatcaacg gagaggcctc cactggatgg gctaagtga
//
