LOCUS       XM_006231235            3087 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus regulatory factor X3 (Rfx3),
            transcript variant X7, mRNA.
ACCESSION   XM_006231235
VERSION     XM_006231235.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006231235.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006231235.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3087
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3087
                     /gene="Rfx3"
                     /note="regulatory factor X3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 14 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     56 samples with support for all annotated introns"
                     /db_xref="GeneID:361746"
                     /db_xref="RGD:1307779"
     CDS             838..3087
                     /gene="Rfx3"
                     /codon_start=1
                     /product="transcription factor RFX3 isoform X5"
                     /protein_id="XP_006231297.1"
                     /db_xref="GeneID:361746"
                     /db_xref="RGD:1307779"
                     /translation="MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQ
                     TVQQVQHVYPAQVQYVEGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQ
                     VTTVVSSHSMVGTGGIQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATIE
                     MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLD
                     PVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQ
                     QPMQQKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFG
                     EVEISSLPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPT
                     DGTTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRP
                     IPSALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQA
                     ARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTL
                     EQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFH
                     LIRLLYDEYMFYLVEHRVAQVTGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDE
                     DLDDSSEPQAKREKTELSQAFPVGCMQPVLESGVQPSLLNPLHSEHIVTSPQTIRQCS
                     ATGNTYTAV"
ORIGIN      
        1 ggccgcagag agtctgggaa agggatcacc cgcgagggat aaacgaccgg ggaacaccac
       61 tagcgatcgc cgagagggag gaaaaaagtc ccgagagggg cggggggaag agaggagagg
      121 gaggggagga gctcatcaca tccgggacat tagccggatc cgcccaggaa atgacgtata
      181 ttcagggggt ggagcccgct cttcaaagtg gggtctgcct ccgcagtagc gcgcgtctca
      241 cacagtgttg ggtccgtcat cactccccct cccctggctt cgcggttttc ctctcgcggc
      301 tgcggggctt ctgggcacag agctggcggc agaggcaggc ggggctcatt tcacggaaag
      361 tagccctggc ctctaagccc tcagcttccc cggcgtccgc agtacggttc ctcaaggcag
      421 actcgcactg accccgggcc cgccaagtct aagcgcacct cggggaaccg acgtcggaat
      481 cccgaccgca gcccccgccc gggctccgag ctgtcagtca cggcgccgaa cccgcttctt
      541 ccggcgctct cgggcccgcc ctctcccctc ctccctcccc cgcccctccc cgcgcgagtg
      601 tctccctctc cctcgctccc tctctctctc cctctctctc tcttttgtga gttatagcaa
      661 ccgttgcctt gtgaatcaag cgccatagtc accgtagtcc tggcgactgt tacccatcaa
      721 caacaactac tcctctcctc ctcctcttcc tcctcctcct cctcctcctc ctccccacca
      781 ccaccatctc catcacccac caacaacacc acaataatcc acagccaaga gaccatcatg
      841 cagacttcag agacgggttc agacacaggt tcgacagtga ctctacaaac atctgtggct
      901 agccaagcag cagtgcctac acaagtggta cagcaggtgc cagtccagca gcaggtgcag
      961 caggtacaga cagttcagca ggtccaacat gtctacccag ctcaggtgca gtatgtggaa
     1021 ggaagtgata ctgtctatac caatggagca atccgaacaa caacgtaccc ctacacggag
     1081 acgcagatgt atagccaaaa cactggaggg aactactttg acactcaagg aagctctgca
     1141 caggtgacga cggtggtgtc ctcccacagt atggtgggta ctggtggtat ccagatgggc
     1201 gtcacaggag gacaactcat cagcagctcg ggaggaacct atctgattgg caattcgatg
     1261 gagaattctg gtcattcagt gacacacaca actcgggcct ccccagcgac aattgaaatg
     1321 gcgattgaga cgctgcaaaa gtctgacggt ctgtccactc acagaagctc tcttctcaac
     1381 agccatctcc agtggctgtt ggacaattac gagacagcag aaggagtgag ccttccaagg
     1441 agcaccctgt ataaccacta tcttcgacac tgtcaggagc acaagctgga cccagtcaac
     1501 gctgcctctt tcggaaaact aataaggtcc atttttatgg ggctacgaac taggagatta
     1561 ggcactagag gaaactccaa gtaccattac tatgggatcc gggtgaagcc agattctcct
     1621 cttaaccgtc tacaagaaga tatgcagtac atggctatga ggcaacagcc catgcaacag
     1681 aagcaaaggt acaagcctat gcagaaagtg gatggggttg cagatggttt cacaggaagt
     1741 ggccaacaga caggcacatc tgttgagcaa actgtaattg cccaaagtca acatcatcag
     1801 cagtttttag atgcatctcg agcacttcca gagtttggag aagttgaaat ctcttctttg
     1861 ccagatggta ctacctttga ggatatcaag tcactgcaga gtctttatcg agagcactgt
     1921 gaggcaatat tggacgttgt tgtgaatctt cagtttagcc tgatagaaaa gctgtggcaa
     1981 acattctggc gctattctcc ctctactcca accgacggca ctaccattac ggaatcaagc
     2041 aatctgagtg aaatagaaag tcgacttccg aaagcaaagc tgataactct gtgcaaacat
     2101 gagtctatcc tgaaatggat gtgtaactgt gaccatggga tgtaccaggc tttggtggag
     2161 attctcatcc ccgacgtcct tagacccatt cctagtgcct tgacccaagc cattcgaaat
     2221 tttgcaaaaa gcctagaagg ttggctttca aatgccatga acaatattcc acagagaatg
     2281 attcaaacca aggttgccgc tgtaagtgcc tttgcccaga ctctgcgaag atacacatcg
     2341 ctcaatcacc tggcccaggc agcccgcgca gtgcttcaga acacttccca gatcaaccag
     2401 atgctcagtg acctcaaccg cgttgacttt gccaatgtcc aggagcaggc ttcctgggtg
     2461 tgccagtgtg atgacaacat ggttcagaga ctagaaacag acttcaagat gaccctgcag
     2521 cagcagagca ctctggagca gtgggctgct tggctagaca atgtgatgat gcaggcgctg
     2581 aagccctatg aaggaaggcc cagcttccct aaagccgccc ggcagtttct gctcaagtgg
     2641 tctttctaca gctcaatggt tatccgggac ttgactttac gcagtgctgc tagcttcggc
     2701 tcctttcacc tgatccggct actctatgat gagtacatgt tctacttagt agagcaccgt
     2761 gttgctcaag tgacaggaga gacgccgata gcagtgatgg gcgagtttgg tgatttaaat
     2821 gctgtgtctc ccggaaatct ggataaagat gaaggcagcg aagtagaaag tgagatggat
     2881 gaagacctgg atgattcttc agagcctcag gccaaaagag agaaaacaga gctaagccag
     2941 gcattcccag taggctgcat gcagcctgtc ctggagagtg gtgtgcaacc cagcctcctg
     3001 aaccccctcc acagcgagca catcgtcacg agtccacaga ccatcaggca gtgcagcgcc
     3061 acgggcaaca cctacactgc ggtctaa
//
