LOCUS       XM_343571               3709 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus raftlin family member 2 (Rftn2),
            transcript variant X1, mRNA.
ACCESSION   XM_343571
VERSION     XM_343571.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_343571.10.
            
            On Jan 21, 2021 this sequence version replaced XM_343571.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3709
                     /gene="Rftn2"
                     /note="raftlin family member 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 76 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363231"
                     /db_xref="RGD:1307304"
     CDS             603..2093
                     /gene="Rftn2"
                     /codon_start=1
                     /product="raftlin-2 isoform X1"
                     /protein_id="XP_343572.4"
                     /db_xref="GeneID:363231"
                     /db_xref="RGD:1307304"
                     /translation="MGCGLRKLEDPDESSPGKIFSTLKRPQVETKTEFAYEYALLDFT
                     LQASTNPEVIKINSVLDIVAKVEDYYLKGYVVGAIHPVIQPVGQRKHLPASHLYRAVL
                     SRVKLSSKHSAAGGQRRARLVIEECPLTCETQGNDSAKELIDKVNAAAKRGMRFVGFV
                     PQHCSPSKHCNGASQDGVAESELHKRQGSQDNCKSLNDGTLWESGVEEEPQPESGQHQ
                     TEGNSSLSYSNPKRGEAPDNKVYMVFNAFEEDSACWTYQEGILSMKVTRKGAVISTLD
                     ANWLELTTFYYKQGLSLVDSFVCWETPKGDQLPKSLEGFFIYEEEGSGVPGSNRRGND
                     AIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPILRHDSEGNLATKQVVFL
                     QRPVTWNSAAQTPERKGGRLLRGEDRNKVGSRSIGLDTSECQPAGGRAPLEEGPLSPS
                     RECWTKEERPTQSDSFSGFSGSDSVLRELDDGQFDQEEGVTQVTCM"
ORIGIN      
        1 tctctctctc tctctctctc tctcccctcc ctctcttctt tcctctccct ctttccctcc
       61 cttccttccc ctgtcctccc ccctcccttc tgcttccttg gtagaagcgg ggaagtgagc
      121 ttcagcacag gacagaccag agaaaacaga aagaaccgca tcactttggc tgactttatc
      181 ttcttctatc cgtagataat cacaccagag ttgcctttaa ttccgtttct ggacacctct
      241 tttccattca gccaactggg tgagacaaag ctggttggtg ccctgagccg cagaactctg
      301 gtagggggct ggctggctgt aaattgacgt ggcatggaaa ttctccacta agttgcagca
      361 gcttgcgagc tcctcaaaga ccgagcccag cctccgggag ctagagctaa accacgggct
      421 cagtgacctt acagaagaat ggataaagtc cccagctctg cgcctcggac ccgccgtttc
      481 ctttctggct atctgtcatt tcgctgaaaa ccaagtcaaa gtctgtaact ttgttttcgc
      541 agcttaaaca acaaaactga ctgctcttgc ccccgcagtc tgaactcctt ggagactttg
      601 ccatggggtg cgggcttagg aagctggaag accctgatga aagcagccct ggaaagatat
      661 tttctaccct gaagagaccg caagtggaaa caaagacaga atttgcttat gaatatgcac
      721 tgctggattt tactttacaa gcttccacaa atccagaagt catcaagata aattcagtcc
      781 tggatatagt tgccaaagtg gaagactatt atcttaaggg ctatgttgtt ggggccattc
      841 accctgttat acagcctgtg gggcagcgga agcacctccc agcaagtcat ctgtacaggg
      901 cggtgctatc ccgagtgaag ctaagctcca agcattcagc cgcaggcgga caaaggcgcg
      961 ccaggcttgt gatagaggag tgcccgctaa cgtgtgagac gcaagggaac gactctgcaa
     1021 aggaactcat agacaaggtt aatgctgctg ctaagagagg gatgagattt gtcggatttg
     1081 taccgcagca ctgctcgcca tctaagcact gcaatggtgc cagccaggat ggagttgccg
     1141 agtcggagct gcacaagaga cagggttcac aagacaactg caaaagcttg aacgacggca
     1201 ccttgtggga gagtggagtg gaggaggaac ctcagcctga aagtggacag catcagactg
     1261 agggaaacag cagcctcagc tactctaacc caaagcgggg agaagcccca gataataagg
     1321 tgtatatggt cttcaatgct tttgaagagg actcggcctg ctggacctat caggagggca
     1381 tcctgtccat gaaagtgaca aggaagggag ctgtcatcag cacgctggac gccaactggc
     1441 tagaactaac cacattttat tacaagcaag gcttgtcttt agttgactct tttgtgtgct
     1501 gggagacacc taaaggggac cagttaccta aatctttgga aggctttttt atctatgaag
     1561 aagaagggtc tggagtccca ggctctaaca ggagaggaaa tgatgccatt gtagtagaac
     1621 agtggacagt cattgagggc tgtgaaatca agactgatta tggccccctg ctgcatacgc
     1681 tggctgaatt tggatggctt ctgacaagcg tgttgcccac acctatattg agacacgaca
     1741 gtgaagggaa cttggctacc aagcaggtcg tgtttctcca aaggccagtg acatggaact
     1801 cagctgctca gaccccagaa aggaaaggcg gccggctgct gaggggtgaa gacagaaaca
     1861 aggtcggcag caggagcatt ggcctcgaca caagcgagtg ccaacccgca ggaggccgag
     1921 cccctcttga ggagggtccc ctctctccct ccagagagtg ttggaccaag gaagagcggc
     1981 ccacacagag cgacagcttc tccgggttca gtggcagcga cagtgtcctc cgggagctag
     2041 atgatggaca gtttgaccag gaagagggcg tgacacaggt cacttgcatg tgagttgcca
     2101 ggtgacccca cagaaggcct tgtaaatagt tattaaaatg actgccatct gactttattt
     2161 caatactatc ttcatttatg taatgttttt taatttccag gctcagcctt cccctaatct
     2221 atgtaaactt tgtctcaacc tctgagacaa ggaagaataa ccaactattt atcaatataa
     2281 aagcttacac tcctctcgac tgtgtaaaca gatgtctcat ctggtcatta agccacaacc
     2341 tggttcactt ccccacaagt ggacaaaaat cagtatttct catcaggcct attaaaaagg
     2401 ctgactatcc aaatcatttc aaccaattag agccttctca ggaagctaca gcctcaatta
     2461 aactaaaaaa tattccttct tccctgtctc tgtccctgtc tcccatggac acagactcgt
     2521 ggaaataact attccctgcc tacagcagtt aatctaattt ttgtctctta ctgttgtatg
     2581 tccagacaaa gtgagcccaa tttgtcaaaa gtcttcaaaa aaacttcttt cctatgtctt
     2641 ttctttcaaa ggggcaccat gtggccagtc ctacagtgaa ccattaactt tgtcattgtt
     2701 ggtcccaata gcccaccagt ggcataaaac agaatttctt aagtcagtta agactgacag
     2761 gatggcgttt gccatgcaag ccttatgacc caagttcagt ctctggaacc catagagata
     2821 tagaaacaga tagaagttct acaacagttg acctccaagc cagtacttgt tcctctgtgc
     2881 cctagtacgt gctcgtgcac gcacagtaaa actaactttt tttttttggt tttttttttt
     2941 ttattctttt tttcggagct ggggaccgaa cccagggcct tgcgcttcct aggcaagcgc
     3001 tctaccaacc cctaaactaa ctttttaaaa agtcactgac gaggggtcac tatggagggc
     3061 actgcatggc tgaccatgac cgtctgcccc gctccaatct agggagaatt caactggctg
     3121 aaccttcaca ccctgactga aaactggtgt ccaatagaca gtgactgact ggttcgtgtt
     3181 taaaaaggtg atttgaagga gagctcacaa tctctttgag gttttttttt attattatta
     3241 ttattattct tttttctgga gctggggacc gaacccaggg ccttgcgctt gctaggcaag
     3301 tgctctacca ctgagctaaa tctccaaccc cgagctcaca atctcaatgt ggaaaagtca
     3361 cggtggaggg aaacatttca tctgtgccaa gcctattttc acctactgtg gcttttacac
     3421 actgagacct actccatggc caccttcctc ccgctgccag ggaggctctc atcttgccca
     3481 gtctttaccc agtaaagatt catcttctac agaacagggg cctttcattt atgtgtgaaa
     3541 ggctgacctc caaaagaatt acagttggcc atgccgttaa gtaattcaca tattatatat
     3601 ttttattggc ttgatgttga cattgtgagt catttgagta ataaactctc ttttgttgtt
     3661 aagctactgt ctgactgaac acaaatatgc ctttgttttc tatacctga
//
