LOCUS       NM_001135866            2166 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RFT1 homolog (Rft1), mRNA.
ACCESSION   NM_001135866 XM_214262
VERSION     NM_001135866.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Oct 16, 2008 this sequence version replaced XM_214262.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2192054.1,
                                           SRR26360194.1309055.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               JAXUCZ010000016.1  5833546-5833661
            117-202             JAXUCZ010000016.1  5838326-5838411
            203-319             JAXUCZ010000016.1  5840130-5840246
            320-509             JAXUCZ010000016.1  5841227-5841416
            510-611             JAXUCZ010000016.1  5842952-5843053
            612-749             JAXUCZ010000016.1  5846869-5847006
            750-828             JAXUCZ010000016.1  5854474-5854552
            829-879             JAXUCZ010000016.1  5856569-5856619
            880-1010            JAXUCZ010000016.1  5857443-5857573
            1011-1155           JAXUCZ010000016.1  5858723-5858867
            1156-1261           JAXUCZ010000016.1  5861745-5861850
            1262-1511           JAXUCZ010000016.1  5866202-5866451
            1512-2166           JAXUCZ010000016.1  5866924-5867578
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p16"
     gene            1..2166
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /note="RFT1 homolog"
                     /db_xref="GeneID:290552"
                     /db_xref="RGD:1562654"
     exon            1..116
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..1679
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /codon_start=1
                     /product="protein RFT1 homolog"
                     /protein_id="NP_001129338.1"
                     /db_xref="GeneID:290552"
                     /db_xref="RGD:1562654"
                     /translation="MGSQEVLGQAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIV
                     GVVNVRLTLLYSTTIFLAREAFRRACLSGGTQRDWTQTLNLLWLTVPLGIFWSLCLGW
                     VWLQLLEVPDPNVVPYYGTGVLLFGLSAVVELLGEPFWVLAQAHMFVKLKVLAESMSV
                     ILRSVLTALLVLWLPHWGLYIFSLAQLLYTAVLVLCYMLYLIKLLRSPESSKQLTLPI
                     SKVTQLLPSISRRKAFVNWNEARLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQG
                     IYDIVNNLGSLVARLIFQPVEESFYIFFAKVLEREKDASLQKQDDVAVAAAVLESLLK
                     LALLTGLTVTVFGFAYSQLALDIYGGAMLSSGSGPVLMRCYCLYVLLLAVNGVTECFT
                     FAAMSKEDVDRYNFTMLALSSSFLVLSYLLTSWCGSVGFIMANCFNMGIRITQSLSFI
                     HHYFQESPHRPLAGLLLSPVLLGVFVLSAGITSVSEAFLCCERGWPARLAHIAVGTIC
                     LGVTLGTAFLTETKLIHFLRTQLGRSRLGDKMT"
     exon            117..202
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            203..319
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            320..509
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            510..611
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            612..749
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            750..828
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            829..879
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            880..1010
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1155
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1261
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1511
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..2166
                     /gene="Rft1"
                     /gene_synonym="RGD1562654"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgacgaagca ggcgcggggc gcgtttcctc ctttgagccg agcctctgag gctatgggca
       61 gccaggaggt actgggccag gcggcccggc tggcctcctc gggtctcctg ctgcaggtct
      121 tgttccgatt aatcaccttt gtcttgaatg catttattct tcgcttcctg tcaaaggaga
      181 ttgtgggcgt agtgaatgtc agactaacac tgctttactc aaccaccatc ttcctggccc
      241 gggaggcctt ccgaagagct tgtctgagtg ggggtaccca gcgggactgg actcagaccc
      301 tcaacctcct gtggctaact gtccccctgg gtatattttg gtccttgtgc ttgggctggg
      361 tctggttgca gttgcttgaa gtacctgatc caaatgtggt cccctactat ggaactggcg
      421 tgctgctctt tggtctctca gcagtcgtgg aacttctggg agagcctttt tgggtcttgg
      481 cgcaagcaca tatgtttgtt aaactcaagg tacttgctga gagcatgtcg gtcatcctca
      541 ggagtgtgct gacggctctt ctggtcctgt ggctgcctca ctggggtctg tacatctttt
      601 ctttggctca gcttctctac acggctgtcc tggtgctctg ttatatgctc tatttaataa
      661 aactactgcg ttccccagaa tcatccaagc aactgactct tcctatctcc aaagtaacac
      721 aactgttgcc cagtatttca agaagaaaag cctttgtcaa ttggaacgag gctaggttga
      781 cttggagctt tttcaaacag tcattcttga aacagatttt gacagaaggt gagcgatacg
      841 tgatgacatt tttgaatgta ttaaactttg gcgaccaggg tatatacgat atagtgaata
      901 acctcggctc ccttgtggcc aggctaattt tccagccagt agaggagagt ttctatatat
      961 tctttgctaa agtgctagag agggagaagg acgcctcact tcagaagcag gatgatgttg
     1021 ctgtggctgc cgctgttttg gagtccctcc tcaagctggc cttgctgact ggactgaccg
     1081 tcactgtttt tggctttgcc tattctcagt tggctttgga catctatgga ggagccatgc
     1141 ttagttcggg atctggccct gtgttgatgc ggtgctattg cctctatgtc ctcctgcttg
     1201 ccgtcaatgg tgtgacagag tgcttcacct ttgctgccat gagcaaagag gacgttgaca
     1261 ggtacaattt caccatgctg gcactgtcct cctcgttttt agtcttatcc tacctgctga
     1321 ccagttggtg tggcagtgtg ggcttcatca tggccaactg ctttaacatg ggcatccgga
     1381 tcacacagag cctttccttc atccatcact acttccaaga gagcccccac agaccgctgg
     1441 ctggcctgct cctgtcacca gttcttcttg gagtattcgt cctcagtgcg ggcattacga
     1501 gtgtctcaga ggcattcctc tgctgtgagc ggggctggcc ggctaggctg gcacacattg
     1561 ctgtggggac catctgctta ggagtgactc ttgggacagc gttcctcaca gagaccaagc
     1621 tgatccactt tctcaggact cagttgggta gatccagact tggtgacaaa atgacatgac
     1681 tttgatgatg ctctggcagt tttggtagca gacccagcat caagcagttc ttggacaggc
     1741 attgctgtgc gaaagccgtg ctatggagtc agaatcaccc tggaggtgag gctgcagagg
     1801 ggagatcatc agtccaaggc ttcctgccag aggaatgtcc tttcaagtga agaccaaaag
     1861 ctggttttgt taatgaatca attccctttg agggtgattg acctttgaag ttacatcttt
     1921 taacaaactc tcttagatgt taatatttag ccattgtttg tttgcccaag aaaaaccaat
     1981 gtagccattg acctgccaca agaatggtta gtttcttcta taaaagaagt aaggagcctc
     2041 tgaatttaca cactgaacat ccacaccttt aatcccagca ctcaagaggc agaggcaggt
     2101 gggtctccaa gttccaggac agctggaact gtcttaaaaa aacaaatata tataaaaaaa
     2161 gaaaaa
//
