LOCUS       NM_001109547            1606 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus refilin A (Rflna), mRNA.
ACCESSION   NM_001109547 XM_001071743
VERSION     NM_001109547.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Mizuhashi,K., Kanamoto,T., Moriishi,T., Muranishi,Y., Miyazaki,T.,
            Terada,K., Omori,Y., Ito,M., Komori,T. and Furukawa,T.
  TITLE     Filamin-interacting proteins, Cfm1 and Cfm2, are essential for the
            formation of cartilaginous skeletal elements
  JOURNAL   Hum Mol Genet 23 (11), 2953-2967 (2014)
   PUBMED   24436304
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVV010002283.1.
            
            On Mar 15, 2021 this sequence version replaced NM_001109547.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16676811
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-291               JACYVV010002283.1  76315-76605
            292-401             JACYVV010002283.1  83138-83247
            402-1606            JACYVV010002283.1  84004-85208
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..1606
                     /gene="Rflna"
                     /gene_synonym="Fam101a"
                     /note="refilin A"
                     /db_xref="GeneID:689711"
                     /db_xref="RGD:1588777"
     exon            1..291
                     /gene="Rflna"
                     /gene_synonym="Fam101a"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..735
                     /gene="Rflna"
                     /gene_synonym="Fam101a"
                     /note="filamin-interacting protein FAM101A; family with
                     sequence similarity 101, member A"
                     /codon_start=1
                     /product="refilin-A"
                     /protein_id="NP_001103017.1"
                     /db_xref="GeneID:689711"
                     /db_xref="RGD:1588777"
                     /translation="MVGHLHLQGMGDTREQSRDGLLDSPDSGLPPSPSPSPPFYALSP
                     GTLDTRATTEVPAATSLFPNPPALEMRSRLLPVFFGESIEVDPEPAHEIRCNSEVTYA
                     SERYFRDKIFYAPVPTVTAYSETIVAAPNCTWRSYRSQLTLEPRPRALRFGSTAIIFP
                     KLARSSFRTTLHCSLGQPRHWYSSSLQLRRCGDPAPSSGCPDVL"
     exon            292..401
                     /gene="Rflna"
                     /gene_synonym="Fam101a"
                     /inference="alignment:Splign:2.1.0"
     exon            402..1606
                     /gene="Rflna"
                     /gene_synonym="Fam101a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttttgctt cgggagcggg tcccagctgg agccgcaggc cggagcctcc ttgtctctcc
       61 tctggcccag tggtggcggg aacacgagct gctggggccc gcgcccagcg cccgccagtc
      121 atggtgggtc acctgcatct gcagggcatg ggggacacgc gggagcagag ccgcgacggc
      181 ttgctggaca gtcccgactc aggactgccc cccagtccca gtcctagccc tcccttctat
      241 gccctgtcgc cgggcacctt ggacacccgt gccaccactg aagttccagc ggccacttcc
      301 ctcttcccaa atcccccagc cctggagatg aggtcccggc tgctgcctgt gttctttggg
      361 gagagcatcg aggtggaccc agaacccgca cacgaaatcc gctgcaactc cgaggtcacc
      421 tacgcctcag agagatactt ccgcgacaag atcttctacg ctccggtgcc cacggtcaca
      481 gcctacagcg agaccatagt agcggcgccc aactgtactt ggaggagcta ccgcagtcag
      541 ctgaccctgg agcctcgccc tcgggccctg cgcttcggaa gcaccgccat catcttcccc
      601 aaactggccc gaagctcctt ccgcaccacg ctgcactgta gcctaggcca gccgcggcac
      661 tggtactcct ccagcctgca gctgcgacgg tgtggggatc ccgcacccag ttctggctgc
      721 cccgatgtac tctgaggcgc ccagtggcag aggaggagcc gagtgtggga gggagtcagg
      781 aaagagggtc aggcgacccc acaggttagg ctggctgtgc ccgagcctag aggattctgt
      841 gaatgaatct ttcattagtc tttacagact tgatggcctt aggggcaggg cccagcatgt
      901 cctggtgtgc cctcgaggca aagacagccc tatgtaccac aggacacagg gcactcagcc
      961 atggtctggt tcccagcgtc attcttggag aggcttgttt caaaataggc cactcagaag
     1021 tgctctcccc ggctgagaac tgcaggtatg gaggctgaac tagcttacct tgaacggaga
     1081 tggggctacc cagaacacat ccgttgtctg ctgtgcaggg cacgtgtccc cacaagacac
     1141 attccagact agcttagaac tcttgagcct caaagctttc gggcaggtgc ccagggaggc
     1201 ttcaaagcta atgacgggac attgccaata actgcctatg gctgactctg gacttgagcc
     1261 tacggcaggg ctcagaaccc caagagaaac tgcctgcttt ttcttggctt cctgttcttg
     1321 cctaggatgg atcctacagc tataccagtt ttcggctctt gcccacaacc tggtcctgtc
     1381 cctggttaaa atgagtctcc gagtccactt agagatggag acgtcccttt gcctcaactg
     1441 gaaacctgcc tactgcctct gtggtggccc agagggaagg gacacacttt gtggggcaaa
     1501 tggactgatt tctatcaatc tagtagctta ccccaagtgc cctcctggtt gaagaacagc
     1561 ttaagaaatt agtgaatcat cctaataaac tgtacgcaca cagcca
//
