LOCUS       XM_039092518            4795 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus replication factor C subunit 1 (Rfc1),
            transcript variant X2, mRNA.
ACCESSION   XM_039092518
VERSION     XM_039092518.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092518.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4795
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4795
                     /gene="Rfc1"
                     /gene_synonym="Recc1"
                     /note="replication factor C subunit 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 28 ESTs, 11 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 88 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:89809"
                     /db_xref="RGD:620619"
     CDS             155..3550
                     /gene="Rfc1"
                     /gene_synonym="Recc1"
                     /codon_start=1
                     /product="replication factor C subunit 1 isoform X2"
                     /protein_id="XP_038948446.1"
                     /db_xref="GeneID:89809"
                     /db_xref="RGD:620619"
                     /translation="MDIRKFFGVISSGKKPVNETVKKNEKTKPSEGTVKGKKGVKEAK
                     VNNPCKEDASRPKQHNKKKRIIYDSDSESEETVQVKNAKKKSEKLPVSCKPGKISRKD
                     PVTYISETDEDDDFLCKKAASKSKENGVSTNSYLGASNVKKNEENTKTKSKPLSPIKL
                     TPTSVLDYFGTESVQRSGKKMVASKKKESSQTPDDSRLNDEAIAKQLQLDEDAELERQ
                     LHEDEEFARTLALLDEEPKTKKARKDSEEGESFSPAKAELSKAAKQKSPANAEHFSIG
                     RKTYSPAKYGKGRGSEGTKQPCRSAHQKEACSSLKASSKLALMKAQEENSYKETELLA
                     AKRESAIEPKGEKTTPRKTKGSPTKRESVSPEDSEKKRTNYQAYRSYLNREGPKALGS
                     KEIPKGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDS
                     GQSKSDKAAALGTKILDEDGLLDLIRTMPGKKSKYEIAAEAEMKKEKSKLERTPQKND
                     QGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKEEERVCPRGLDAKEPHGSHSASREEC
                     LLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKVASKDDG
                     SSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESLNNTSI
                     KGFYTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNH
                     PKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVL
                     HNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVFAAGEETAHMSLMDKSDL
                     FFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDGDLVDNQIRSKQNW
                     SLLPTQAIYASVVPGELMRGYMSQFPSFPSWLGKHSSTGKHDRTVQDLSLHMSLRTYS
                     SKRTVNMDYLSHIRDALVRPLTSQGVEGVQRVVTLMDTYYLVKEDFDNIMEVSSWGGK
                     PSTFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKASRPSIGPALDSEYNEESQEDATQ
                     SDEKEQDALETDAMIKKKTRSSKPSKSEKEKESKKGKGKNSKK"
ORIGIN      
        1 gggagcgcgc ctccgacgtc atcaccgcgc gccgcctgag cgtctgctac ttcgcgggag
       61 aagttgttgg cgccaatgta ttccgagcgg cgataacgga tacccctcca gtcacgggcc
      121 tgcccacctg ctcctgttcg gtcgtggggc tgcgatggac attcggaaat tctttggggt
      181 tatatcaagt ggaaaaaagc ctgtaaatga gacagtaaag aagaatgaga agacaaaacc
      241 ttcggaggga actgtcaaag gaaagaaagg agtaaaggaa gccaaggtta ataatccctg
      301 caaagaggat gcctccagac caaagcagca caacaagaaa aagaggatca tctatgactc
      361 agattcagaa tcagaggaga cagtgcaagt aaaaaatgct aaaaagaaat cagaaaaatt
      421 gccagtgtct tgtaaacctg gtaaaatctc tcggaaggat cctgttacct atatttctga
      481 gacagatgaa gacgatgact ttttatgtaa aaaggcagcc tccaaatcaa aagagaatgg
      541 agtatctaca aacagttacc ttggagcatc aaacgtgaaa aagaatgaag aaaacactaa
      601 gactaagagt aaaccgttat caccaataaa actaacaccg acatcagtgc ttgattattt
      661 tggaactgaa agtgtccaga gatctgggaa gaagatggtg gcgagcaaaa agaaagagtc
      721 ttctcaaacc ccagatgatt ccagattaaa tgatgaggcc atcgccaagc agctgcagct
      781 tgatgaagat gcagagctgg agaggcagtt gcatgaagat gaagaatttg caagaacact
      841 ggccttgttg gatgaagaac ctaagaccaa aaaggctcga aaggactctg aagagggaga
      901 atcattttca cctgccaaag ctgagttaag caaagcagca aagcagaaga gccctgctaa
      961 cgcagagcat ttctcaattg gaagaaagac ctacagtcct gctaagtacg gcaagggtag
     1021 aggctcagaa ggcaccaagc agccctgcag atcagctcac cagaaggaag cctgctcctc
     1081 tctcaaggcc agctccaagc tggctcttat gaaagcacaa gaagaaaatt cttacaaaga
     1141 aacagaactg ctggctgcaa aaagagaaag tgccattgag cccaaaggag agaaaacaac
     1201 tcctaggaaa acgaaaggct ctccaactaa aagagagtct gtaagcccag aagattctga
     1261 aaagaagcgc accaattatc aagcttatcg aagctactta aatcgagaag gtcccaaagc
     1321 cctgggctcc aaagaaatac ccaagggagc tgaaaactgc ttggagggcc tgacgttcgt
     1381 gatcaccgga gtgctggagt ccatcgaacg agaagaagcc aagtctctaa ttgaacgtta
     1441 tggggggaaa gtaacaggaa acgtgagcaa gaaaaccagc tacctcgtca tgggccggga
     1501 cagcgggcag tccaagagtg acaaggcagc agctctggga acaaaaatcc ttgatgaaga
     1561 cggcctgttg gatctgattc gaactatgcc gggcaaaaaa tccaagtacg aaatcgctgc
     1621 tgaggctgag atgaagaaag aaaagtccaa attggagaga acaccccaaa aaaatgatca
     1681 gggaaaaaga aaacttagtc caaccaagag ggagttggag cctaaaaaga gcaagctgac
     1741 tccccttaag cacagccctc ggaaggcagt gaaggaggag gaacgtgtgt gtccgagggg
     1801 cttggacgcc aaggagcctc atggcagcca cagtgccagc agagaggagt gcctgctctg
     1861 ggtggataag tacaagccca cctcactcaa gaacataatc ggacagcagg gtgaccagag
     1921 ctgtgccaac aaactgctac gctggctcag aaactggcac aagagttctc cagaagagaa
     1981 aaagcatgca gcaaaatttg gcaaagttgc cagcaaagat gatggctcca gtttcaaggc
     2041 agcactgctg tctggccctc caggtgttgg caaaaccact acagcttctc ttgtgtgtca
     2101 ggaattgggc tacagttatg tggaactaaa tgcgagtgat actcggagta agaacagtct
     2161 gaaagcaatt gttgctgagt cattgaacaa caccagcatc aaaggctttt atacaagtgg
     2221 agcatctcct tctgtaagtg cgaggcatgc tctcatcatg gatgaagttg atggcatggc
     2281 gggcaatgag gacaggggtg gaattcagga gctaataggc ctgataaagc atacgaaaat
     2341 tcccatcatt tgtatgtgca atgatagaaa tcaccccaaa atccgctcat tggttcatta
     2401 ttgttttgat cttcgtttcc aaagacctcg agttgaacag attaagagtg caatgctgtc
     2461 tattgcattt aaagagggat taaagatccc acctccagct atgaatgaaa taattttggg
     2521 agctaatcaa gatgtcagac aggttttaca caatctcagt atgtggtgtg cacagagtaa
     2581 ggtcctaacc tatgaccaag ccaaggctga ttctcagagg gccaagaagg acatcagatt
     2641 gggcccattt gatgtcaccc ggaaagtgtt tgcagctgga gaggagactg cacacatgtc
     2701 actgatggac aaatcggatc tctttttcca tgactattcc attgcacccc tctttgtcca
     2761 ggagaactac ctccatgtaa agcctgtggc tgcagggggt gacatgaaaa agcacttgat
     2821 gcttttaagc cgggcagcag atagcatatg tgacggtgac ttagtggaca atcagatccg
     2881 gagtaagcaa aactggagtc ttctgcccac acaggccatt tacgccagcg ttgttcctgg
     2941 agagttgatg aggggctaca tgtctcagtt tcccagcttc ccaagctggc tgggaaagca
     3001 ctcgtctacg ggcaagcatg atcggactgt tcaggacctg tccttgcaca tgagtcttag
     3061 aacttactcc agcaaaagga cagtgaacat ggattacctg tcacacatca gagacgcact
     3121 tgtacgaccc ttgacctcac aaggagtaga aggggttcag cgtgttgtca cacttatgga
     3181 tacatactat ttggtgaaag aagattttga caacatcatg gaagttagca gctggggggg
     3241 caagcccagt accttttcca agctggaccc caaggtgaaa gcagccttca caagagccta
     3301 taataaggag gcccacctga ccccatactc acttcaggtg gtaaaggcat cgaggcccag
     3361 cataggtcca gcactggatt ctgagtacaa tgaagagtca caggaagatg ccactcagtc
     3421 tgatgagaaa gagcaggatg ccctagagac tgatgccatg atcaagaaaa agacgagatc
     3481 ttcaaagcct tcaaaatcag aaaaagagaa ggagtccaaa aaaggaaaag gaaaaaattc
     3541 gaagaaatga agcccttgtt cattaccaat aactgctttt aacttaccct ctcgactaat
     3601 tcagctggtc tagagaccga aagcctcacc ctttgccaga gtaacaggtt tggtgtagca
     3661 cagtggagtg gcctggtggt ctcattgtaa aggacggtac agcgagaagg tctatagcca
     3721 gctctcgtgc acctcttata gaggaggaca ggactgtctc agccctgcag tgcccttgcc
     3781 aactgttaga ctgctgggac tcgaggtgac ttaagactca aaagtagaag tgcacaggtg
     3841 ttggagtcag attttagttg accataccaa gactgggtgc agcaggactg aggcctcttc
     3901 tgtagcttaa gtctatccca gtggccttag agggccaacg cttaagttta ttccaatggc
     3961 cttagagggc tgatgctgtt tttttgtttt ttttttttgt tttttttttt aaaaaacatg
     4021 gtagctctta ttttatggtc aaactgtaaa taaaccttaa tccaaagcac ccatcagctg
     4081 gagccgagca ttcttggtct gtagtcaggt atctcgcaaa gagtgcatca ggaatcaggt
     4141 gtccatgtga tgcatgggtc acttttgtca ccttgaagag caaactatta tgctggtata
     4201 atactctcct tattaatttg gttggattac aatattcagc atttcttact aactctgtga
     4261 attgcagttc tgcaagtgaa gggtcagagc tcaagttccc agcatccctt tgcactgacc
     4321 acattgctgc tgtaggtagt ctcaggccac ttggctagtc agggtgagta gacacgggac
     4381 tgctacacat tcctgtcccc gtgcagtctt aaccctcagg ttgaaacaga gtctaggctg
     4441 ggtcagaccc acaggctcat tctggccggg aaatgctgtc ctgtgatggc gtctataagc
     4501 cctactggaa tttcagattg tgtctagaac tgtgcttgtt gaaggaccct gagctgtggc
     4561 cataacctgg cctttagctg tttagttctt tttaaatcag aaagtgctca gaggtctatg
     4621 ctgcctctgt gaggtaaatg ccaaaaagaa tataaaggaa ggaccatgct ctgtctctga
     4681 ggactcatgg cattgttggg agacgagacc tggagacgtt gaaagtgtgt taaccagtgg
     4741 agtgtgtttc gtggagatcg gttcattatg gaaataaaac actgcttaag cctga
//
