LOCUS       NM_001079706            2541 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RNA exonuclease 5 (Rexo5), mRNA.
ACCESSION   NM_001079706 XM_001075588 XM_001075607 XM_219390
VERSION     NM_001079706.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128775.1.
            
            On or before Dec 11, 2006 this sequence version replaced
            XM_219390.4, XM_001075607.1, XM_001075588.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128775.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132303, SAMD00132304
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..2541
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /note="RNA exonuclease 5"
                     /db_xref="GeneID:309036"
                     /db_xref="RGD:1305412"
     exon            1..77
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            78..198
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..2346
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /note="putative RNA exonuclease NEF-sp"
                     /codon_start=1
                     /product="RNA exonuclease 5"
                     /protein_id="NP_001073174.1"
                     /db_xref="GeneID:309036"
                     /db_xref="RGD:1305412"
                     /translation="MELEEEENPRKRKETPNSALTTELDRPSWDVQDPEPQAKKARLS
                     TILFTDNCEVTHRQLCELLKYAILGKSTLPKPSWCQLLHQKQLNNVVVFILKGMSQLH
                     FYRFYLEFRFLRKTFRHKFSLPPPTSSFLFDIIGLQKKKSARGCPRTVEGPLISATLK
                     SSIDLQNDPIIQKYGYKNVSLTRCLLTKEEMKTFHFPLQGSPNCENFILLKYSGFITD
                     SSPLFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEI
                     LNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRR
                     FKLTFLAKVILGKDIQCPNKLGHDGIEDARTALELVQYFLKYGPKKIAEFNLEALAAN
                     QEQGNKEGATHMRSVLECLDSMGQKLLFLTQDIDELSSYRNCQTVKCSSNKEVLEQAR
                     VEVPLFPFNIVQFSFRPFPPLFAEEMKNNMKTRWTEMSTIYAGPFSKDCNVGSLKKVF
                     SSLGPVQSITLVLETYRPYFSIQYELLEAAQLAIETMNGTILEGSCIRVHRLLTELTL
                     ECDTLVRELEQDSENQGTIYVAGIGETFKEHLLEQSNLFPDLEAVILPKELKSRKQKN
                     YCFLKFKTFNSAQVALEVLKGKDWKLKGRNALTSRHLQAWLKNIHPEPSMPMGLRIVP
                     PLLERHIFRTLKANHPKIVAWRWSRRIEKLYHSLSPGTFCLILLPGTKNTFGSHPGLG
                     LMKIKEEEGGDTLL"
     exon            199..311
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            312..438
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            439..535
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            536..679
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            680..768
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            769..884
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1023
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1118
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1221
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1298
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1299..1413
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1518
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1656
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1657..1749
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1966
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            1967..2154
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2273
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
     exon            2274..2520
                     /gene="Rexo5"
                     /gene_synonym="2610020h08rik; Exnef; RGD1305412"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgggcgcg gcagacgaag ccggttcctg tagggcagcg gcggccctca gcagcggtct
       61 gtggggcgtt gcctaggcct gatggagcta gaggaggagg agaaccccag gaaaaggaag
      121 gagaccccga actcggcctt gactacagag ctggatagac cttcgtggga tgttcaggat
      181 ccagagcctc aagccaagaa agctcgctta tctaccattt tatttactga caattgtgaa
      241 gtaacccata gacagctgtg tgagttgctg aagtatgcaa ttctgggtaa atccactctt
      301 cctaaaccca gctggtgcca gcttttacac caaaaacaac taaacaacgt ggtggttttt
      361 attctgaagg gaatgagtca gctgcatttc tacaggttct atttggaatt cagatttctc
      421 cgaaagacat tcagacataa attcagcttg cctcctccaa catctagttt tctgtttgat
      481 atcattgggc tgcaaaagaa aaaatcagct agaggttgtc ctaggactgt ggaaggacct
      541 ttaatttctg ccactttaaa atccagcatc gacctacaga atgaccccat cattcaaaag
      601 tatggctata agaacgtgag cttgaccaga tgccttctga caaaagagga aatgaaaaca
      661 tttcactttc ctttacaagg gtctcctaac tgtgaaaact ttatccttct caagtatagt
      721 ggtttcataa cagatagcag tcccctcttt ggacttgact gtgaagtgtg ccttacatcc
      781 atggggaaag aactaacacg catctcactg gttgctgaag gaggctactg tcttatggat
      841 gaacttgtca agcctgattt caagattctg gactacctta ctagtttttc aggaatcaca
      901 aaggagattc ttaacccagt gacaaccaaa ctcaaagatg tacagaagct gttaagagaa
      961 ctgcttcctc ctgatgctgt gttagtgggc cattgcctag acttggatct cagagtatta
     1021 aaaataatac atccatatgt tattgatacc tcattgcttt atattggaaa gcaaggcaga
     1081 agatttaagc taacattttt agccaaagtt attttgggga aggatattca gtgtcctaac
     1141 aagcttggcc atgatggcat agaagatgct agaacagctc ttgagctggt tcagtatttt
     1201 cttaagtatg ggccaaagaa gattgcagag ttcaatctgg aagcactagc agccaatcaa
     1261 gagcaaggaa acaaggaagg agctacacac atgaggagtg ttttagaatg cctggactca
     1321 atggggcaga aactcctttt cttgacacag gatatagatg agctttcttc ttacagaaac
     1381 tgtcaaactg ttaagtgctc ttcaaataaa gaggtgcttg agcaagccag agtggaagtc
     1441 cctttgttcc ccttcaacat tgtgcagttc tcttttcgcc cctttccacc cctcttcgct
     1501 gaagagatga aaaacaatat gaagaccagg tggacagaga tgtcaactat ctatgctggg
     1561 ccatttagca aagattgtaa cgtcgggtcc ctgaagaagg tgtttagtag cttgggccca
     1621 gtacagtcta taactcttgt tcttgaaact tataggcctt acttctccat acagtatgaa
     1681 ctcctggaag ctgctcagct ggctatagag accatgaatg gcacgatatt agaaggttcc
     1741 tgcatcaggg tacacaggct tttgacagaa cttacccttg agtgtgatac ccttgtaaga
     1801 gagctagagc aagattctga gaaccaaggt actatatatg tggctggaat cggagaaacc
     1861 tttaaagaac acctgttgga gcagtccaac ctctttcccg acctagaagc tgtgatcctg
     1921 cctaaagagc ttaaaagcag aaagcaaaaa aactactgtt tcttgaagtt taaaactttc
     1981 aacagtgccc aggtagccct tgaagttctc aaaggcaaag actggaagtt gaaaggcaga
     2041 aatgccctaa cctccaggca ccttcaggca tggctcaaga acatacatcc cgaaccatca
     2101 atgcctatgg ggcttcgaat tgtacctcct ctcttggaga ggcacatctt caggactctg
     2161 aaagccaacc acccaaagat agtagcctgg cgctggagcc ggagaattga aaaactctac
     2221 cacagcctga gcccaggcac cttctgcctc atcctactac caggaaccaa gaacaccttt
     2281 ggatcccacc ctggcctagg actgatgaaa ataaaagagg aagagggagg cgacaccctg
     2341 ctgtgagagt gtgagtctcc ccacactttc ctagtgctgg tgcatatgct ctaggctaca
     2401 gccctttcaa gatgatgacc gaaagcctct ccctcctgca gacagctttg ctgaaacatt
     2461 gggataccca ctaaagtata ctgacatgtt ccaaagccca ataaatgcct aaaactcaaa
     2521 aaaaaaaaaa aaaaaaaaaa a
//
