LOCUS       NM_001012114            5006 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus RNA exonuclease 1 homolog (Rexo1), mRNA.
ACCESSION   NM_001012114 XM_234939
VERSION     NM_001012114.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5006)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 5006)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jun 29, 2022 this sequence version replaced NM_001012114.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.28943.1,
                                           SRR26643299.29737.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-286               JAXUCZ010000007.1  9804754-9805039
            287-1971            JAXUCZ010000007.1  9814716-9816400
            1972-2073           JAXUCZ010000007.1  9817205-9817306
            2074-2287           JAXUCZ010000007.1  9817886-9818099
            2288-2451           JAXUCZ010000007.1  9819342-9819505
            2452-2583           JAXUCZ010000007.1  9819795-9819926
            2584-2707           JAXUCZ010000007.1  9820167-9820290
            2708-2821           JAXUCZ010000007.1  9820927-9821040
            2822-2959           JAXUCZ010000007.1  9821288-9821425
            2960-3073           JAXUCZ010000007.1  9821601-9821714
            3074-3147           JAXUCZ010000007.1  9822015-9822088
            3148-3258           JAXUCZ010000007.1  9822283-9822393
            3259-3374           JAXUCZ010000007.1  9822727-9822842
            3375-3513           JAXUCZ010000007.1  9822926-9823064
            3514-3634           JAXUCZ010000007.1  9823149-9823269
            3635-5006           JAXUCZ010000007.1  9823346-9824717
FEATURES             Location/Qualifiers
     source          1..5006
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..5006
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /note="RNA exonuclease 1 homolog"
                     /db_xref="GeneID:314630"
                     /db_xref="RGD:1309872"
     exon            1..286
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..3723
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /note="transcription elongation factor B polypeptide 3
                     binding protein 1; REX1, RNA exonuclease 1 homolog"
                     /codon_start=1
                     /product="RNA exonuclease 1 homolog"
                     /protein_id="NP_001012114.2"
                     /db_xref="GeneID:314630"
                     /db_xref="RGD:1309872"
                     /translation="MLRSTGFFRSIDCPYWAGAPGGPCRRPYCHFRHRGARGPGAPGS
                     GGVTSPAAGLGYDPYNPELPQPPVQRENGALGQGDGMLELELVNQAIEAVRGEVELEQ
                     RRYQELLETARGHGAGASALAPCSPATSMDDDDTFSLALTYTPGGLLSPDAAYQPTPL
                     AVPAEPGHKYSLAPSDRGQSRAAGGAGALEYVPKAVGQPRRGGKYVVDSSKPSTDLEY
                     DPLSNYSARHLGRTSTRDERATKRPRGSRGTEPYTPALKKPCDPSGGCEARFSDSEDD
                     VSSPPKADDPESKAPGKPVSKEGIEPEEGSLRVTKEMAVQYDVEDLGQPPKAPDTVSV
                     VKPSSPARASQDAGVPKEGKAKKKKSGTPASLSHKDKVRKKDKKKEKDPARPRGKEKV
                     CADRKKLSSSSPRGKAQGLEGTKKKPSSATTVASSGKGGTGHPSSTGPQDRGPNSRAP
                     LAWKGGCAKKMPSVKLAERKTRSLDEGAPQDTPKLKKRALSHAELFGDESEEEDSGLG
                     TAPRVWPPTLPSLSSDSESDSDSSLGLGETKVPKRLKAAPPASPAPPSPLSSSSSSGA
                     SQCAEEGVGYSALEKELDLDVDPMEECLRIFNESTSVKTEDKGRLARQPPKEKAEEET
                     HAGLTTLFPGQKRRVSHLSKPGKEAEAPKRTPVAPPARPPTAQEVCYRRAQQAQRDSA
                     SWLQAVPRPTERLSSVHISAPGEKRRIAHVPNPRLAAPPTGAKRALPASGSQVSHGPE
                     PGSQPLKTRTLSGMASKTTTTVTPKRMAHSPSLQSLKKPVIPKEFGGKVPTVVRQRYL
                     NLFIEECLKFCSSNQEAIEKALNEEKVAYDRSPSKNIYLNVAVNTLKKLRGLVPNAVP
                     NLSKASSRRVVSHEVVLGGKLAAKTSFSLSRPSSPRVEELKGTALYSRLREYLLTPEQ
                     LKENGYPFPHPERPGGAVIFTAEEKKPKDPSCRICCRCGTEYLVSSSGRCVRNEECYY
                     HWGRLRRNRVAGGWETQYMCCSAAVGSVGCQVAKQHVQDGRKENLEGFVRTFQKELPE
                     DAHAGVFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNAVVDYNTRFSGVTE
                     ADLVDTSITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLG
                     LPYKRSLRNLMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIREDAKTKR"
     exon            287..1971
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1972..2073
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..2287
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2288..2451
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2452..2583
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2584..2707
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2708..2821
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2822..2959
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2960..3073
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3074..3147
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3148..3258
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3259..3374
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3375..3513
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3514..3634
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
     exon            3635..5006
                     /gene="Rexo1"
                     /gene_synonym="Tceb3bp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcctcggg acaagatggc ggcggcggcg gggtccgaaa agcgcgagtg gaagcctccg
       61 gggcgagtgt gaggaggggt cccggggtcc cgggtatctc cgggccgggg ccccgctgcg
      121 gaacggacca tgctacgttc taccggcttt tttcgctcca tcgactgccc atactgggcg
      181 ggagcccccg gggggccttg ccggcggccc tactgccact tccggcaccg cggagctcgg
      241 ggtcccggcg ctcccggtag cggcggcgta acatctcccg cagcaggact tggctatgac
      301 ccgtacaacc cggagctacc ccagcctcct gtgcagaggg agaatggtgc tctgggtcag
      361 ggcgatggca tgctggagtt ggagctggtc aaccaggcca tcgaggctgt gcgtggcgag
      421 gtggagctgg agcagaggcg ctaccaggag ctcctggaga ctgcacgggg ccacggtgct
      481 ggggcttcag cactggcccc ttgcagccct gccacaagca tggatgatga tgacaccttc
      541 tccttggccc tgacttatac gccaggcggc ctgctgagcc cggacgctgc ctaccagccc
      601 accccattgg ctgtccctgc cgagccaggg cacaagtact cactggcccc ttcagacagg
      661 ggtcagagca gagctgcagg aggcgctggt gccctggagt atgtccccaa ggctgtgggc
      721 cagcctcgtc gcggtggcaa atacgtggtg gatagctcaa agccatcaac agatctagag
      781 tatgacccac tgtccaacta ttcagcccgg caccttggca ggaccagcac tagggacgag
      841 agggccacca agcggccgcg gggctccaga ggtactgagc catacacacc tgccctcaag
      901 aagccctgtg acccctctgg cggctgtgag gccaggttct cagactcaga agatgacgtg
      961 tccagccccc caaaagccga tgaccctgaa agcaaggcac ctggtaagcc tgtctccaag
     1021 gagggcatag agcccgagga gggcagcctg cgggtcacca aggagatggc tgtgcagtat
     1081 gatgtggaag acctcgggca gccccccaaa gcaccagaca cagtgtccgt ggtcaagccc
     1141 agctctccag ccagggcctc tcaagatgct ggggtcccca aggagggcaa agccaagaag
     1201 aagaaaagtg ggaccccagc cagcctcagc cacaaggaca aggtccgcaa gaaagacaaa
     1261 aagaaagaga aggacccagc cagaccccga ggaaaggaaa aggtgtgtgc agacaggaag
     1321 aagctgtctt ccagtagccc ccggggcaaa gcccagggac tcgaagggac caaaaaaaag
     1381 ccatcctctg ctaccacagt ggctagctca gggaaagggg ggacgggcca cccatccagc
     1441 acggggcccc aggaccgtgg gcccaattcc cgtgcaccac tagcctggaa aggtggctgt
     1501 gcaaagaaga tgccatcagt aaagttggcg gaacgcaaga cccgctccct ggatgaagga
     1561 gccccccagg acacccctaa gctcaagaaa cgggccctga gccatgccga actatttggg
     1621 gatgagagtg aggaggagga ctcaggcctg ggaacagcac cccgggtctg gcccccgacc
     1681 ctgcccagcc ttagctcaga ctcagaatca gactctgact ccagcctggg tctgggtgag
     1741 acaaaggtac ccaagcgtct caaggccgcg ccgcccgcat cccccgcacc gccctcccca
     1801 ctgtcctcct cctcgtcctc tggagccagc cagtgtgcag aggagggtgt gggctactcg
     1861 gccctggaga aggagctgga cttggatgtg gaccctatgg aggagtgcct gcggatcttc
     1921 aacgagtcca ccagtgtgaa gacagaggac aagggccggc tggcccggca gccacccaag
     1981 gagaaggccg aggaggagac gcatgcgggc ctgaccactt tgttcccagg gcagaagagg
     2041 agagtctcac acctttccaa gcctggcaag gaggcagagg ccccaaagag gacccccgtg
     2101 gcccccccag cacggccccc aactgctcag gaggtgtgct accggcgagc acagcaggca
     2161 caaagggact cagccagttg gctacaggct gtcccacggc caactgagag gctttcctct
     2221 gtgcacatct cggcgccggg ggagaagagg aggatcgctc acgtgcctaa cccccgactg
     2281 gccgcccccc ccacaggtgc caagagggcg ctccctgcca gcggcagcca agtgtcccac
     2341 ggccccgaac ctggcagcca gccactgaag acacgtacgt tgtcagggat ggcatctaag
     2401 accaccacca ccgtcacccc caagcgcatg gcccacagcc cgtcactcca gagtctaaag
     2461 aagcccgtta tcccaaaaga atttggtggc aaggtcccca ctgtggtccg ccagcgctat
     2521 ctcaacctgt tcattgagga gtgtctcaag ttctgttcat ccaaccagga ggccattgag
     2581 aaggccctga acgaggaaaa ggtggcatat gaccgcagtc ccagcaagaa catatacctg
     2641 aacgtggccg tgaacaccct taagaagctg aggggcctgg tccccaacgc cgtgcccaac
     2701 ctcagcaaag ccagtagccg cagggttgtg tcccatgagg ttgtgctggg gggcaaattg
     2761 gcagctaaaa ccagcttctc actgagccgc cccagcagcc cgcgggtaga ggagctgaaa
     2821 gggactgccc tgtacagccg cctcagggag tacctgctca ctccagagca gctgaaggag
     2881 aatggctacc ccttccccca cccagagcgc ccagggggcg cagtcatctt cacagctgag
     2941 gagaagaaac ccaaggaccc ctcctgcaga atttgctgtc gctgtggcac cgagtacctg
     3001 gtctcctcct cgggccgctg tgtgcgcaat gaggagtgtt actaccactg ggggcggctc
     3061 cggcggaatc gagtggctgg gggctgggag acccagtata tgtgctgctc agctgcagtc
     3121 ggatctgtgg gctgtcaggt cgccaagcaa cacgtgcagg atggccggaa ggagaacctg
     3181 gagggctttg tgcgtacctt ccagaaggag ctgcctgaag atgcccatgc cggggtcttt
     3241 gccctcgact gtgagatgtc ctacactaca tacggcctgg agctgacacg agtcacagtc
     3301 gtggacacag acatgcaggt cgtgtatgac acctttgtca agcctgacaa tgccgttgtt
     3361 gactacaaca ccaggttctc aggggtgaca gaggccgacc tggtggacac gagcatcacg
     3421 ctgcgggacg tgcaggccgt cctgctgagc atgttcagcg ccgacaccat cctcattggc
     3481 cacagcctgg agagtgacct gctggctctc aaggtcatcc acggcacagt ggtagacacc
     3541 tctgtgctgt tcccacatcg cctgggcctg ccctataagc gctcactgcg gaacctcatg
     3601 gctgactacc tcagacagat catccaagac aatgtggacg ggcacagctc cagtgaagat
     3661 gccagtgcct gtatgcacct tgtcatctgg aagatccgag aagacgccaa gaccaagcga
     3721 tgactcccat ccaacattac catgccaccc cttcttccaa ccctggctgc cctcaacccc
     3781 gacccctcag ccctgacgcc cttggcctct tttcaaactg tgtaataaaa catgacagct
     3841 gaccctgcgc ctcccgagct cgagccgcag gtctgcagtg agcagcccag agccgaggct
     3901 gagaccagtc ctcagcccag ccccacaccc gtccaacgtg tcaccacctc ctcccccagt
     3961 cctgtcccat ggagcctgct gctgcccggg gcagagctgg cctagtctct gtgcccctgt
     4021 caggcacccc tacccttaac cccccagccc accgctcccg acagtgggtt atgccttccg
     4081 ctcctttgta tataacgcag gcgacaggac aagccctcat ggtttgagac gggttgtctt
     4141 tttttacttt atactgttat ttttattaat ttttaattta aacctgctga cctgcacacc
     4201 tcctcagctg agggtcaacc cacatggtca gtcccatggg cctggatgtt caccctgccc
     4261 acttgggggg tagcttccag aactcacccc agcccaccca ggactcccca acctcagagc
     4321 caagccagcc ccttggtctg gccttcaggg cctctgggct atcatctggg ggatgccacc
     4381 tccctccgag taggaacaga ataaatgttt gtatgaactt tagatttcat agtgtgttgt
     4441 gctttggggg ccagacagga ccctgacacg tgcccggtca agaaaaatgg aaacgactcc
     4501 catgttcaag ccagctctca acccatgggc ccatgccacc cagcatgggg acctgtgaga
     4561 caccgaagct ctaggtaggc tgtgctcgac agcccttccc tgagggcacc tggctgttgt
     4621 gcaggctggt ggtgcgcctt cattcccttt tgcctgttag gagccaaggt ccaaggtgga
     4681 gacttggagt ccctggtgtc ctgaggaatg gcctgacaat ctaggccact ctgtccccgt
     4741 caggaaacaa gctttgcaac actcacatcc aatgtgacct cagcttgatt ggctgcctct
     4801 tggcacttat ctgtggggca gagtaggcct ggagccatgc agggaaacct gggtgtgaca
     4861 gtcagggtct aagggagctt ccttggctaa gcctggcttc cactctcacg ggtatccttg
     4921 agcaatctgt cccctcttct atcttgtgta aacaaggttt ttttttttaa ataaataaat
     4981 aaatggtgcc catgtattcg caaaaa
//
