LOCUS       XM_039111340            3328 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus reduced expression 2 like 2 (Rex2l2),
            transcript variant X1, mRNA.
ACCESSION   XM_039111340
VERSION     XM_039111340.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111340.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3328
                     /gene="Rex2l2"
                     /note="reduced expression 2 like 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 41 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     78 samples with support for all annotated introns"
                     /db_xref="GeneID:100362123"
                     /db_xref="RGD:1586249"
     CDS             16..1968
                     /gene="Rex2l2"
                     /codon_start=1
                     /product="zinc finger protein 883-like isoform X1"
                     /protein_id="XP_038967268.1"
                     /db_xref="GeneID:100362123"
                     /db_xref="RGD:1586249"
                     /translation="MLGGSRRSCSEKPAEVTGSSAPQSFSVSLLSPFQEVLVGDSSRV
                     LELLVFKPGCEISRKLPIFESVRRTTKRMSVALGNTLQGFLTFKDVAPEFTLEEWESL
                     NYTQRALYMDVILETYNNLLSVENNLIGGKHGNVLEQDTECIVHEHMNIQKNFCKWDE
                     ISKMTLESTQSTPYKTHLRDSSLQSSNLKRHRAGKTREIYKYKDCVQFSNECAILGVN
                     SGIHIENKEHKNTEFDKDFVYKHKQMLKQDINGKNLHQCSTCDKCFARKRNLHLHQRI
                     HSGEKPYKCSQCDKYFAQQSCLMRHQRSHSGEKPYKCNQCDKFFAQVSHLSIHQRSHT
                     GDKPYKCSECDKCFTQKGTLRNHMRIHTGEKPYKCDKCDKYFGRKSHLRVHQRIHTGD
                     KPFKCSECDKCFTEKGPLRNHMRIHTGEKPFRCSKCDKCFVYKCSLRMHQRIHTGEKP
                     YKCSQCDTYFARQYWLMCHQISHTREKPYKCNQCDKSFAQVSYLSIHQRIHTGDKPYK
                     CSECDKCFRYKGSLKIHQRIHSGEKPYKCSECDKYFSQQSNLSIHRRIHTGEKPYKCS
                     ECDKCFGYKGSLRIHQRIHTGEKPYKCSECDKCFGHQSNLTIHQRIHIGDKPYKCSKC
                     DKWFGHRVSLRIHQRICTGEKPNKCG"
ORIGIN      
        1 acaggaagct gctgaatgtt gggcgggtcc agaaggagtt gctctgagaa acccgcggaa
       61 gtgacaggaa gttccgcccc tcaaagtttc tccgtgtctt tgctgtctcc ctttcaggaa
      121 gtcctggtgg gagactcgtc ccgagtcctg gagcttttag ttttcaaacc tggttgtgaa
      181 atttcaagaa aacttccaat atttgaatct gtgagaagaa caacaaaaag aatgagtgtg
      241 gctctgggaa acactctaca gggtttctta accttcaaag atgtggctcc agagttcaca
      301 ctagaggaat gggaaagtct caattatact cagcgggcac tgtacatgga cgtgattttg
      361 gagacgtaca acaatctatt gtctgtggaa aataatctaa taggtggaaa acatgggaat
      421 gttttggaac aagacacaga gtgcattgtc catgagcata tgaatatcca aaagaacttt
      481 tgtaaatggg atgaaattag caaaatgact cttgaatcca cccaaagtac accttataaa
      541 actcatctcc gagattcctc ccttcagtcc tcaaacctga aaagacatag agctgggaaa
      601 acgagagaaa tttacaaata taaagactgt gtacaatttt caaatgaatg tgctatcctt
      661 ggtgtaaatt ctggaatcca catagagaac aaagaacaca aaaatacaga atttgataag
      721 gattttgtct ataaacataa acagatgctg aaacaagaca ttaatggtaa gaaccttcac
      781 caatgtagta catgtgataa atgctttgcc agaaaaagga atcttcattt gcatcaaaga
      841 attcattcag gagagaaacc ttacaaatgt agtcaatgcg acaaatattt tgcccaacaa
      901 tcctgtctta tgcgtcatca aagaagccat tcaggagaga aaccatacaa atgcaaccaa
      961 tgtgacaaat tctttgccca agtgtcccat cttagtattc atcagagaag tcatacagga
     1021 gataaacctt acaaatgcag tgaatgtgac aaatgcttta ctcagaaagg cactctgaga
     1081 aaccatatga gaattcatac aggagagaaa ccttacaaat gcgataaatg tgacaaatac
     1141 tttggcagaa aatcccatct tagagtgcat cagagaattc atacaggaga taaacctttc
     1201 aaatgcagtg aatgtgacaa atgctttact gaaaaaggcc ctctgagaaa ccatatgaga
     1261 attcatacag gagagaaacc tttcagatgc agtaaatgtg acaaatgctt tgtctacaaa
     1321 tgcagtctga ggatgcatca gagaattcat acgggagaga aaccttacaa atgtagtcaa
     1381 tgtgacacat attttgcccg acaatactgg cttatgtgtc atcaaataag ccatacaaga
     1441 gagaaacctt acaaatgtaa ccaatgtgac aaatcctttg cccaagtatc ctatcttagt
     1501 attcatcaga gaattcatac aggagataaa ccatacaaat gcagtgaatg tgacaaatgc
     1561 tttcgctaca aaggcagtct gaaaattcat cagagaattc attcaggaga gaaaccatac
     1621 aaatgcagtg aatgtgataa atactttagc cagcaatcca atcttagtat tcatcggaga
     1681 attcatacag gagagaaacc ttacaaatgc agtgaatgtg acaaatgctt tggctacaaa
     1741 ggcagtctga ggattcatca gagaattcat acaggagaga aaccttacaa atgcagtgaa
     1801 tgtgacaaat gctttggcca ccaatccaat cttactattc atcagagaat tcatatagga
     1861 gataaacctt acaaatgcag taaatgtgac aaatggtttg gccacagagt tagtttgaga
     1921 attcatcaga gaatttgtac aggagagaag ccaaacaaat gtggttaata tgacaaatgc
     1981 ttttcccaaa actacagtgt ttgtgtacat cagagacttc atacaggaga gaaactttac
     2041 aaatgtggtg aatgtgacat atgctttggc caacagtctc atcttagtat tcatcagaga
     2101 attcatttag gacaaaaacc tttcaaattt cctttatgtg ggaaatactt tacccactaa
     2161 gtcttaattc atcagagaat tcatactgga gagaaacaat gtaagtgaac tgaatgtgac
     2221 aaatgtttta ctcacaaagc tactttgacg attgttcaga gaagtcatcc aggagaataa
     2281 atttacaaat gtgtgacaaa tactttaccc tgaaatgcag tcttcatgta cattagagac
     2341 tttatagagg agagaaacct tacaaatgca gtgaatgtga caaatgcttt acccaaatgt
     2401 taacctagaa aggcatcaga gatttcatac atgagataat aatacttgca agtgttatgt
     2461 acatgaaaaa tgcattaact acagtgtaag tctgacagat tacatacagt ggagaaacat
     2521 tataaattta gtcaataaaa caattcttta cctgcaaata tcgtcttaaa attcattaga
     2581 taatccttaa agtagagaaa atttcaaatg ttttagagat gtgaaccttt tcttttggcc
     2641 tatcttttag aatcaacaaa atatgtacat gtgacaatct gaagaaatat aatatatttg
     2701 gagatatctt tgatttcatt tcaggtcaga gaaaacgttt taaatttttt tgtgcagaag
     2761 tatatcttgc aaaaattgag cttctgccct agagaatttg tatgattatg aaaacgtcag
     2821 aaaccttcat gcagtgttca aatcttagaa aatgtcaggt atttatggtg agaaaaactc
     2881 tgaaaatatg acagtatagg aaagtcttca ttaaactttt acctgttcac cgtgaaatat
     2941 tccaagatga agacatgtgg ggaagtcaga ataatagagt gttgtgtaac actttcatgg
     3001 caacagaaat tatctatttc aaaggaactt cacctctcaa aatgtctaat aaaactgtca
     3061 ggattctgta tattcaagtg atcaattcag acaaattata cttaaaaagg tttatttgac
     3121 aaactcagat accaaaactg tttgttcttt atcctataaa tatgtctaca gatgttaagt
     3181 ctcctttgac aatccagtat tcataattct tattaaatgc tggtttcatg tttgagtata
     3241 acgactgaga ctgattacgt gtccttgtgc tgtgtggtca acaactcctt cccctttgtt
     3301 gtgtaaataa atgtgaatga ttcccaaa
//
