LOCUS       XM_006239357            1892 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus reduced expression 2 (Rex2),
            transcript variant X1, mRNA.
ACCESSION   XM_006239357
VERSION     XM_006239357.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006239357.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1892
                     /gene="Rex2"
                     /note="reduced expression 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     long SRA reads, 12 Proteins"
                     /db_xref="GeneID:691254"
                     /db_xref="RGD:1586256"
     CDS             224..1774
                     /gene="Rex2"
                     /codon_start=1
                     /product="zinc finger protein 501-like isoform X1"
                     /protein_id="XP_006239419.1"
                     /db_xref="GeneID:691254"
                     /db_xref="RGD:1586256"
                     /translation="MVKAKETSNKGCRFVVFKCGCEISRTLPIFESGRRTTKRMSVAL
                     GNTLQGFLTFKDVAPEFTLEEWESLSFAQRALYMDVILETYYNLLSLENYVICEKHGK
                     VLDRDTECVVDEHVNIQEKFCKWEEISKVTLESTQSTPYKTNLRDPTLKAGKTREVYK
                     YKDCVQFSNECAIAGVNSRIHIENKEHNKEFDKDFVHEDKLTLKQNINGKNLHQCSEC
                     EKCFTKTRDLHLHQRIHTGKKRYKCSQCDKSFARESYLRHHQRIHTGEKPYKCSECDK
                     CFTEKGTLRTHMRIHTGEKPYKCSECDKCFTEKGTLKRHMRIHTGEKPYKCSECDKCF
                     RLQFHLNIHQRIHTGEKPYKCSECEKYFTYKCNFRIHQRIHTGEKPYKCSECDKFFTE
                     KGTLRFHQRIHTGEKPYKCGECDKCFGHKSHLSIHQRIHTGEKPFKCSQCDKCFTEKG
                     TLRSHMRIHTGEKPYKCSECDKCFRLQCHRSIHQRVHTGDKRYKCNECDKCFGYKSSL
                     RIHQRIHT"
     polyA_site      1892
                     /gene="Rex2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggaagttccg cccttccagc tctctccctg tcttggcttc ctcacattca ggaagtcctg
       61 gtgggagact cgtcccggag acctagaggt acctgaaaac ttctttaagc tgcagttgct
      121 gtgccggctt cctaggacat tcatcagctg gtcctgtcac cctgccaggt cttcatatgt
      181 tcagcaaatc tgcataacta taaatcgaaa ctaagagtac tggatggtaa aggccaaaga
      241 gacttctaac aaaggatgca gatttgtagt tttcaaatgc ggttgtgaaa tttcaagaac
      301 acttccaata tttgaatctg ggagaagaac aacaaaaaga atgagtgtgg ctctgggaaa
      361 cactcttcag ggtttcttaa ccttcaagga tgtggctcca gagttcacac tagaggaatg
      421 ggaaagtctc agttttgctc agcgggcact gtacatggat gtaattttgg agacttacta
      481 caatctattg tctttggaaa attatgtgat atgtgaaaaa catggtaagg tattggatag
      541 agacacagag tgcgttgtcg atgagcatgt gaatatccaa gagaagtttt gtaaatggga
      601 agaaattagc aaagtgactc ttgaatccac ccaaagtaca ccttataaaa ctaatctccg
      661 agatcccacc cttaaagctg gaaaaaccag agaagtttac aaatataaag actgtgtaca
      721 gttttcaaat gaatgtgcta tcgctggtgt aaattccaga attcacatag agaacaaaga
      781 gcacaataaa gaatttgata aggattttgt ccatgaagat aaactgacac tgaaacaaaa
      841 cattaatggt aagaaccttc accaatgtag tgaatgtgag aaatgcttta ccaaaacaag
      901 ggatcttcat ttgcatcaga gaattcacac aggaaagaaa cgttacaaat gtagtcaatg
      961 tgacaaatcc tttgcccgag aatcctatct taggcatcat cagagaattc ataccggaga
     1021 gaaaccttac aaatgcagtg aatgtgacaa atgctttact gaaaaaggca ctctcagaac
     1081 ccatatgaga attcataccg gagagaaacc ttacaaatgc agtgaatgtg acaaatgctt
     1141 tactgaaaaa ggcactctga aaagacatat gagaattcat acaggagaga aaccttacaa
     1201 atgcagtgaa tgtgacaaat gctttcgcct acaattccat cttaacattc atcagagaat
     1261 tcatactgga gagaaacctt acaaatgcag tgaatgtgaa aaatacttta cttacaaatg
     1321 taattttagg attcatcaga gaattcacac aggagagaaa ccttacaaat gcagtgaatg
     1381 tgacaaattc tttactgaaa aaggtactct gagatttcat cagagaatac atacaggaga
     1441 gaaaccttac aaatgtggtg aatgtgacaa atgctttggc cacaaatccc atcttagtat
     1501 tcatcagaga attcatacag gagagaaacc tttcaaatgc agtcaatgtg acaaatgctt
     1561 tactgaaaaa ggcactctga gaagccatat gagaattcat accggagaga aaccttataa
     1621 atgcagtgaa tgtgacaaat gttttcgcct acaatgccat cgtagtattc accagagagt
     1681 acatacagga gataaacgtt acaaatgcaa tgaatgtgac aaatgctttg gctacaaaag
     1741 tagtctgaga attcatcaga gaattcatac ttgaaagaaa caaagataaa cagaaccgaa
     1801 agctgatgct ttgagaaaat caacaagata gataaacact tagccagaat aatcacaggg
     1861 catagagact gtggccaaat taacaaatat ca
//
