LOCUS       NM_001100760            2541 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus reticulophagy regulator family member 2
            (Retreg2), mRNA.
ACCESSION   NM_001100760 XM_001057799 XM_343592
VERSION     NM_001100760.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Aug 30, 2012 this sequence version replaced
            XM_343592.5, XM_001057799.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC104673.1, SRR22399481.2555817.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-337               JAXUCZ010000009.1  84088991-84089327
            338-444             JAXUCZ010000009.1  84089580-84089686
            445-475             JAXUCZ010000009.1  84090866-84090896
            476-611             JAXUCZ010000009.1  84091253-84091388
            612-696             JAXUCZ010000009.1  84091578-84091662
            697-840             JAXUCZ010000009.1  84091905-84092048
            841-935             JAXUCZ010000009.1  84092203-84092297
            936-1071            JAXUCZ010000009.1  84092618-84092753
            1072-2541           JAXUCZ010000009.1  84093370-84094839
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..2541
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /note="reticulophagy regulator family member 2"
                     /db_xref="GeneID:363252"
                     /db_xref="RGD:1306844"
     exon            1..337
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..1697
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /note="protein FAM134A; family with sequence similarity
                     134, member A"
                     /codon_start=1
                     /product="reticulophagy regulator 2"
                     /protein_id="NP_001094230.1"
                     /db_xref="GeneID:363252"
                     /db_xref="RGD:1306844"
                     /translation="MASSGGGNTGAGGTSGLGLGLGLGLCMGEATGDAEEEAAAAEAV
                     GRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAATLNGLFWLLSSSSLRPFFLL
                     SISLLTYFLLDLWHPRFLPDVSAPPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESW
                     LTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLV
                     VYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNAPPAGDEPLAETES
                     ESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSED
                     LDQQSLPSEPEEALSRELGDGEETELAPPEDLLSAPPALSKQALDTEEEGAADKETLL
                     QLSSPLHFVNTHFNGAGSPQEGVKCPPGGPVETLSPEAVSGDLMAPSSTLSPQLCLAE
                     SGPVTLLSPSVLPSLPQDSPQALTAPEEEEALTTEDFELLDQGELEQLNAELGLGPEM
                     PPKPPDVLPPPPLGPDSHSLVQSDQEAHAVVEP"
     exon            338..444
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            445..475
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            476..611
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            612..696
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            697..840
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            841..935
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1071
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..2541
                     /gene="Retreg2"
                     /gene_synonym="Fam134a; RGD1306844"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgacgcgcc ctcggcggcg gccgcgcagc cctggctcct cgcgggctcg ggcagcggct
       61 gcggcgcggt gatggcaagc agcggtggcg gtaacaccgg cgcgggtggc acctcggggc
      121 tgggcctggg cttggggctg ggcctctgca tgggtgaggc caccggcgac gcggaggagg
      181 aggcggccgc agccgaggcg gtgggacgcc tggctacgtc cctgtggctg cggctccgtg
      241 gctgggaggc ggtgctggcg gctgcacagc gactgctggt atgggagaag ccgctgcaca
      301 gcctggtcac ggcggccaca ctcaacggcc tcttctggtt gttgtcttcg tcgtcccttc
      361 ggcccttctt cctgctcagc atatcacttc tgacctattt tctcctggat ctctggcatc
      421 ctcgctttct ccctgacgtt tcagcaccac cccctgaaga accgcactcc gacagtgagg
      481 gtgcggggtc aggcgcccag ccgcacctgc tgagtgtgcc cgagttgtgc agatacctgg
      541 ctgagagctg gctcaccttc cagattcacc tgcaagagct gttgcagtac aagaggcaga
      601 atccagctca gttctgtgct cgagtctgtt ctggctgtgc tgtgctagct gtgttgggac
      661 actatgttcc aggaattatg atttcctaca ttgtcttgct aagtatcctg ctgtggcccc
      721 tggtggttta tcatgaattg atccagagga tgtatactcg cctggagccc ttgctcatgc
      781 agctggacta cagtatgaag gcagaagccg atgcccttca ccacaaacat gacaagagaa
      841 agcgtcaagg gaagaatgca cccccagcag gagatgagcc actggcagaa acagagagtg
      901 aaagcgaggc agagttggct ggcttctctc cagtggtgga tgtgaagaaa acagccctgg
      961 ccttggctat tacagactct gagctgtcag atgaggaggc ctctatctta gagagcggtg
     1021 gtttctctgt ctctcgggcc accaccccac aactgacaga tgtttctgag gatttggacc
     1081 agcagagcct accaagtgag ccagaagagg ctctgagccg ggaactaggg gatggggagg
     1141 agacagagct ggcccctcct gaagacctgc taagtgctcc tccggccctc tcaaagcaag
     1201 ccctggatac cgaagaggag ggggctgcag acaaggaaac cttgcttcag ctctcatccc
     1261 cgcttcactt tgtgaatacg cacttcaatg gggcagggtc cccccaggaa ggagtgaaat
     1321 gccctcctgg aggaccagtg gagaccctga gcccagaggc agtgagtggt gacctaatgg
     1381 ctccatccag caccctctca ccccaactat gccttgctga aagtggtcca gttaccctcc
     1441 tctctccctc tgtgctccca tcccttcccc aggactcacc tcaagccctg actgctcctg
     1501 aggaagaaga ggcactcacc actgaggact ttgagttgct ggatcagggg gagctggagc
     1561 agctgaatgc agagctgggc ttgggaccag agatgccccc aaagccccct gatgttctgc
     1621 ctcctcctcc cctggggcca gacagccatt ctctggtaca gtcagaccaa gaggctcatg
     1681 cagtggttga gccatgagcc atggcagaat gagctgcagg cacactaggg cttcctaact
     1741 aggcttgtca cattttctcc tctccctacc actctgggga gagagaggca ctgtgtggga
     1801 aagctggctg tcagatggaa gccagcccac tctgcctgcc tgcccgcctg ctgtcctggg
     1861 acctggtata ataccaagcc caggattggt tttatgtctg taaataattt tccatttggg
     1921 ttagtggacg tgatgaaggc gagggacatc cttccgtagc ctgcagttgc ttccctgcct
     1981 cgtcccttct cattgtactg tgtcccacgc cctggtggtc accttttctt tctcttccta
     2041 tcctcaggga cctgctgctc cgccctcatg tcccacttgg ttgtttagtt gaggcacttt
     2101 ataattttct ctactgtccc acctcccctt ggctttaaga ccctgctgtg tcctgtcctt
     2161 cgcagcctga tccccactct ttgccacctc ctcttttctc acaggcgctg gccaagtttt
     2221 agggcaggtt ctcttctgag gagactgggt ggtgtcaggc cagcagtgct gtgcttgggt
     2281 cactgtcacc ttgaacctgc actgtaccct tgcccagttc aaccctcacg atgcagaaca
     2341 gcagggtccc atagcacttt gccagcactg aggatggcat gttctctctc cttttgaggt
     2401 gagggacttc cttctgtatt agagaggaag aacaaaacct actcgtctgg accacagttg
     2461 agactcccag ccagggtcta aagtggatag taagatctct gtaggtgtta actggaaaaa
     2521 taaactgttg attggctaga a
//
