LOCUS       XM_039109153            6042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus arginine-glutamic acid dipeptide
            repeats (Rere), transcript variant X8, mRNA.
ACCESSION   XM_039109153
VERSION     XM_039109153.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6042
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /note="arginine-glutamic acid dipeptide repeats; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 67 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 72 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
     CDS             593..3637
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X6"
                     /protein_id="XP_038965081.1"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
                     /translation="MFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGR
                     ASPVNEDVRSSGRNSPSAASTSSNDSKAEAVKKSAKKVKEEAASPLKNTKRQREKVAS
                     DTEDTDRATSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS
                     IPSPQDNESDSDSSAQQQMLQTQPPALQAPSGAASAPSTAPPGTTQLPTPGPTPSATT
                     VPPQGSPATSQPPNQTQSTVAPAAHTLIQQTPTLHPPRLPSPHPPLQPMTAPPSQNSA
                     QPHPQPSLHGQGPPGPHSLQTGPLLQHPGPPQPFGLTPQSSQGQGPLGPSPAAAHPHS
                     TIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGP
                     SPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQS
                     LPPPAASHPTTGGLHQVPSQSPFPQHPFVPGGPPPITPPSCPPTSTPPAGPSSSSQPP
                     CSAAVSSGGNVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHA
                     SQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREERERE
                     KEKEKEREREREREREAERAAQKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAV
                     PPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIR
                     ERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPA
                     AGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLAR
                     LQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPYPPGT
                     LPNPLLGQPPHEHEMLRHPVFAEPVLRLAGTPYPRDLPGAIPPPMSAAHQLQAMHAQS
                     AELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQL"
ORIGIN      
        1 acttgcgaag tgcaggctga cacccgggcc tggcgggagc aaacgcctca gccgcgggcc
       61 ggagtggcca cgacgagagg gagagaccgg cgcgggtttc gctgcctcac tgtgggcagg
      121 cggcctggcc ccgaaacgct tcgttaaggg gctccgacag tacggcaaga acttcttcag
      181 aatcagaaag gagctgcttc ccaataagga aaccggggaa ctgattacct tctattacta
      241 ctggaagaaa acaccagagg cagccagctc ccgtgcccac cgccggcacc gcaggcaggc
      301 tgtgttcaga agaattaaga ctcgcacagc gtccacccct gtcaacacgc cctccagacc
      361 tccttccagt gaattcttgg atctgagttc ggctagtgag gatgactttg acagtgagga
      421 cagcgagcag gagctgaagg ggtacgcctg ccggcactgc ttcaccacca cctccaaaga
      481 ctggcaccac gggggccgag aaaacatcct gctgtgcaca gactgccgca tccacttcaa
      541 gaagtacggt gagctgccac ccatcgagaa gcccgtggac cccccgccct tcatgttcaa
      601 gcctgtcaag gaggaggacg atgggctcag tgggaagcat agcatgagga ctcggcggag
      661 tcggggctcg atgtctacac tccgcagtgg tcggaagaag cagcctgcca gtcctgatgg
      721 ccgcgcctca cctgtcaatg aggacgtgcg atccagtggc cggaactccc ccagcgctgc
      781 cagcacttcc agcaatgaca gcaaagcaga ggctgtgaag aagtcggcca agaaagtgaa
      841 ggaagaggct gcgtcccctc tgaagaacac caagcgccag cgggagaagg tggcctccga
      901 cacagaagac actgacaggg ccacctccaa aaagacaaag acccaggaga tcagccgccc
      961 taactctccc tctgaaggtg agggggagag ttccgacagt cgcagtgtca atgatgaggg
     1021 cagcagtgac ccaaaagaca tcgaccagga taatcgcagc acgtccccca gtatccccag
     1081 ccctcaagat aatgagagcg actcggactc atcagcacag cagcagatgt tgcagaccca
     1141 gcctccagcc ttgcaagctc ccagtggggc tgcctctgct ccctccacag cccctccagg
     1201 gacaacccag cttcccaccc cagggcctac accctctgct actacagtcc ctccacaggg
     1261 ctcccctgca acctcacagc cccctaacca gactcagtct acagtggcac ctgcagccca
     1321 caccctcatc cagcagacgc ccaccctgca tccccctcgg ctgccctcac ctcatcctcc
     1381 actgcagcct atgactgcac cacctagcca gaactctgca caacctcacc cccagccctc
     1441 cttgcatggt cagggccctc ctggccctca cagcctacag actggacccc tactacagca
     1501 cccaggacct cctcagccct ttggactgac tccccagtcc tcccaaggtc agggccctct
     1561 gggtccctcc ccagcagcag cccatcctca cagcaccata cagcttccag cctctcagtc
     1621 ggcactgcag cctcaacagc ccccaaggga acagcccttg cctcctgccc cgttagccat
     1681 gcctcacatc aaacccccac ccaccacacc aattccccag cttccagcac cacaggccca
     1741 caaacatccg cctcacctct caggcccctc ccccttctca atgaatgcca atctgccacc
     1801 cccaccagcc ctgaagcccc tcagctcact gtccacacac catcctccct cagcccaccc
     1861 tccaccccta cagcttatgc ctcagagcca gcccttgccc tcttcacccg cccagccccc
     1921 tgggctgacc cagagtcaga gcctcccacc ccctgctgcc tcccacccta ccactggcgg
     1981 cctccaccag gtgccctcgc aatccccatt cccccagcac ccttttgtac ctggaggccc
     2041 ccctcccatc accccaccct cctgcccccc cacttccacc cctcctgcgg ggcccagctc
     2101 ctcatcacag ccaccctgct ctgctgctgt gtcttctgga ggcaatgttc caggggcgcc
     2161 atcttgccca ctccctgctg tgcagatcaa ggaagaggct ctggatgaag ccgaggagcc
     2221 agagagccct cctccacccc ccaggagccc atcccctgag cctactgtag tggacacccc
     2281 cagccatgct agccagtctg ccaggttcta caaacacctg gaccggggct acaactcgtg
     2341 tgcacggaca gacctgtact tcatgcctct ggctggatcc aaactagcca agaagaggga
     2401 ggaggccatt gagaaggcca agcgggaggc tgaacagaaa gcccgagagg aacgagagcg
     2461 agagaaagag aaggaaaaag agcgagagcg ggagagagag cgggaacggg aagcagagcg
     2521 cgctgctcag aaggcttcta gctcagcaca tgaaggccgt cttagtgacc ctcagctcag
     2581 tggtccaggt cacatgcgac cctccttcga gccaccaccg accacaattg ctgctgtgcc
     2641 cccatatatt gggcctgaca cacctgccct ccggacactg agcgaatatg ctcggccaca
     2701 tgtcatgtct cccaccaacc gtaaccaccc cttctacatg cccctcaatc ccaccgaccc
     2761 cctcctggcc taccacatgc ctggcctgta caatgttgac cccaccatcc gggagcggga
     2821 gctccgagaa cgtgagatca gagagcgcga gatccgggag cgggaattgc gggagaggat
     2881 gaagccaggc tttgaggtga agcccccaga gctggacccc ctgcacccag ccaccaaccc
     2941 catggagcat tttgcccggc acagcgccct caccatccct cctgcagctg gcccccaccc
     3001 ctttgcctct ttccacccgg gcctcaaccc tttggagcgg gagagactgg cgctagcagg
     3061 tcctcagctg cggcctgaga tgagttaccc agacagactg gcagctgagc gcatccatgc
     3121 cgagcgtatg gcgtcactca ccagcgaccc cctggcacga ctgcagatgt tcaatgttac
     3181 tccacaccac caccagcatt cacacatcca ctcccacctc cacctccacc agcaggatcc
     3241 tctccaccaa ggttcagcag gcccagttca ccccctggtt gaccccctga ctgctggccc
     3301 tcacttagct cgcttcccct accctccggg caccctcccc aatcctctac ttggacagcc
     3361 cccccacgag cacgagatgc tacgccaccc agtttttgca gagcctgttt tgcgcttggc
     3421 aggcaccccc tacccccgag acctgcctgg ggctattcca ccccccatgt cagcggccca
     3481 ccagcttcag gccatgcatg cccagtcagc agagctgcag agactagcca tggagcagca
     3541 gtggctgcat ggacatccac acatgcatgg tggccatcta cccagtcagg aggattatta
     3601 cagtcgactg aagaaggaag gagacaagca gttataagtt atttatttgt tatgctgctg
     3661 tggaaacccc agttctaggg ggcagaaaca ggacttttac atctagtagg cgctgcaaga
     3721 gcaaagagga atatcgtcta aagatttctc tatatttaaa cccacaacta aaaacacatc
     3781 tgcatagtag tgtttgtttg ttgagaggat ttcctgagac cagttgaggt ctccctgcat
     3841 gacagtcccc cagaaacggc gtgtcctggg ctggactgac acccagaaaa cgtacctgcg
     3901 atcttggggt ttggctttag ttctcttttc cttgatttct cagtaggtgc tagagtccgt
     3961 tcacaccctt cactgtgcgc gcagacactg aggcacgtgg gctctggaac ccacggggtt
     4021 tgcaaagagg cggcgtatga gtttgaaatc caagagctat aatttttaaa aaatctttta
     4081 ttttactaca ttgtaggaaa tcttcataat ttgagacagt tctgcagcat ggctttttac
     4141 atctgtaaat aaataatttt agaagtcttt ttttctgtcc acagacgact attctgatct
     4201 attttttcca gccatgtcac aaagtgtgaa ttcctaccag ctattgacag aatacagagt
     4261 tgatttttta ataaaaagtt atatataatt atccctttaa ttaaagggaa cagatgggcg
     4321 tttctgtttc tagtttgaag caggcaggag cttgggacta ggtttggtca cagcagtgag
     4381 cacccaaggg ttggcaggga cagtgttaca ggctctttgt tttgctgctt tgatttcatt
     4441 tctgtctgtc cctcgcatgt gcagtggcag gcgtgtttga gcgagcctcc ttcctcattc
     4501 ataggggttc agtgttgact ctgttccctg gtgtccccac tgtcctgtgt ctggtataga
     4561 aagcgcatgt ttatgtgtat gtgtctgatg ataagtttcc ctagagtgtt atgcacatgt
     4621 ttgattgttc tagataaatt gtcataaaca ttctaggaag ctcaagaaaa tgatgcagta
     4681 cccagcacat gaaagaccta tgccatgtgc ttgccaaagg aatgttagag tctgctcatg
     4741 tgcatgtcac cacgccaagc cgtgccagcc acagactgag agacttcaga gtgaggaacc
     4801 ccctagggtc actatggttg tatggttgtg ctcagggcta tgcagcaggc tgtgcaggaa
     4861 gctgtgtcct gcgtttcctc ctggaatagg aattaaggtc ctggttgaag caggttcccc
     4921 tgggaagtcc tctccagcag gccttcggag cagaactgac tcctgccccg ctgtccctga
     4981 tggagttctc ctaccagagc tgtgaccctc ccttggactc tggaatgcag tggttgcatt
     5041 tagaaacagc tagctagtca aggaccatcg atggcagcag acgaggtgtg tcctggccct
     5101 gtggagagaa gtgtgtgtgg ttcagctggc attcactccg ctccaggctc tgactcaggt
     5161 ggcagagcct catgctccct gagccatgca tggggcaact aggatccatt tgtccgttgg
     5221 agatgtttgt agcttttttg ttttgttttt taactttgtt tttctcattc catttctgcc
     5281 ttaattttgg ttcttcatag gaggcaagct caaattaacc ttttgtcatc agaccttctg
     5341 gccgccttgg catgaaggca tctttttcct ctggggttgg tgacatggcc tccggatggt
     5401 ctgcctgccc tccagccctc tggactgagg aagaccccca caggatctgg acaggcaggt
     5461 cctttctgtc ccacgccacc acctccttcc ccttttaact gagtctgccg ttcagttaac
     5521 cctttatttc ctttctagta cccatttcca aagagaaaga gtgaagtact ttgaagtctg
     5581 tacttgaaat ctgtctggca gtgtttccct attagttctg ggtttctccc ctgtcccaag
     5641 gtgaagcgct gagagccttc atttctccgt gactgacagc agttcgtttg gaggccctgg
     5701 acctttgtgg cgtctttgaa gcctggcctc ttggcttcct tttggatttt ccttgctttg
     5761 atttgaagtt tgggtttgct ttccgtgttc tgtacgtatc ttgttcagtg tcgtcaaggt
     5821 tgagcttcac gtctcactgc agtggagcga gcggacattc tgatcgctgc atttctttag
     5881 atctcggagc taaatgtata tatgagtagt tcgcaatgag ataacacagt gtaaacagta
     5941 gacacccaga aaatcgtgac ttctgtgttt tctccatttg agtattttgt aatttttttg
     6001 aaatatttgt ggacataaat aaaaccaagc tacactacag ca
//
