LOCUS       XM_039109152            6048 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus arginine-glutamic acid dipeptide
            repeats (Rere), transcript variant X7, mRNA.
ACCESSION   XM_039109152
VERSION     XM_039109152.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6048
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6048
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /note="arginine-glutamic acid dipeptide repeats; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 70 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 124 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
     CDS             599..3643
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X6"
                     /protein_id="XP_038965080.1"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
                     /translation="MFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGR
                     ASPVNEDVRSSGRNSPSAASTSSNDSKAEAVKKSAKKVKEEAASPLKNTKRQREKVAS
                     DTEDTDRATSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPS
                     IPSPQDNESDSDSSAQQQMLQTQPPALQAPSGAASAPSTAPPGTTQLPTPGPTPSATT
                     VPPQGSPATSQPPNQTQSTVAPAAHTLIQQTPTLHPPRLPSPHPPLQPMTAPPSQNSA
                     QPHPQPSLHGQGPPGPHSLQTGPLLQHPGPPQPFGLTPQSSQGQGPLGPSPAAAHPHS
                     TIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGP
                     SPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQS
                     LPPPAASHPTTGGLHQVPSQSPFPQHPFVPGGPPPITPPSCPPTSTPPAGPSSSSQPP
                     CSAAVSSGGNVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHA
                     SQSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREERERE
                     KEKEKEREREREREREAERAAQKASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAV
                     PPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAYHMPGLYNVDPTIR
                     ERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPA
                     AGPHPFASFHPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLAR
                     LQMFNVTPHHHQHSHIHSHLHLHQQDPLHQGSAGPVHPLVDPLTAGPHLARFPYPPGT
                     LPNPLLGQPPHEHEMLRHPVFAEPVLRLAGTPYPRDLPGAIPPPMSAAHQLQAMHAQS
                     AELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQL"
ORIGIN      
        1 tccccgcgcc ccgcgccccg cgcggccccg ccgcggtcac acgccaagca gcccgcggcc
       61 gcctggccct gcgctttgtg gagcccgggg acgggcgcgg cctccttacc tgtagctgcg
      121 agtcttcatc ggatcggaga aacgcttcgt taaggggctc cgacagtacg gcaagaactt
      181 cttcagaatc agaaaggagc tgcttcccaa taaggaaacc ggggaactga ttaccttcta
      241 ttactactgg aagaaaacac cagaggcagc cagctcccgt gcccaccgcc ggcaccgcag
      301 gcaggctgtg ttcagaagaa ttaagactcg cacagcgtcc acccctgtca acacgccctc
      361 cagacctcct tccagtgaat tcttggatct gagttcggct agtgaggatg actttgacag
      421 tgaggacagc gagcaggagc tgaaggggta cgcctgccgg cactgcttca ccaccacctc
      481 caaagactgg caccacgggg gccgagaaaa catcctgctg tgcacagact gccgcatcca
      541 cttcaagaag tacggtgagc tgccacccat cgagaagccc gtggaccccc cgcccttcat
      601 gttcaagcct gtcaaggagg aggacgatgg gctcagtggg aagcatagca tgaggactcg
      661 gcggagtcgg ggctcgatgt ctacactccg cagtggtcgg aagaagcagc ctgccagtcc
      721 tgatggccgc gcctcacctg tcaatgagga cgtgcgatcc agtggccgga actcccccag
      781 cgctgccagc acttccagca atgacagcaa agcagaggct gtgaagaagt cggccaagaa
      841 agtgaaggaa gaggctgcgt cccctctgaa gaacaccaag cgccagcggg agaaggtggc
      901 ctccgacaca gaagacactg acagggccac ctccaaaaag acaaagaccc aggagatcag
      961 ccgccctaac tctccctctg aaggtgaggg ggagagttcc gacagtcgca gtgtcaatga
     1021 tgagggcagc agtgacccaa aagacatcga ccaggataat cgcagcacgt cccccagtat
     1081 ccccagccct caagataatg agagcgactc ggactcatca gcacagcagc agatgttgca
     1141 gacccagcct ccagccttgc aagctcccag tggggctgcc tctgctccct ccacagcccc
     1201 tccagggaca acccagcttc ccaccccagg gcctacaccc tctgctacta cagtccctcc
     1261 acagggctcc cctgcaacct cacagccccc taaccagact cagtctacag tggcacctgc
     1321 agcccacacc ctcatccagc agacgcccac cctgcatccc cctcggctgc cctcacctca
     1381 tcctccactg cagcctatga ctgcaccacc tagccagaac tctgcacaac ctcaccccca
     1441 gccctccttg catggtcagg gccctcctgg ccctcacagc ctacagactg gacccctact
     1501 acagcaccca ggacctcctc agccctttgg actgactccc cagtcctccc aaggtcaggg
     1561 ccctctgggt ccctccccag cagcagccca tcctcacagc accatacagc ttccagcctc
     1621 tcagtcggca ctgcagcctc aacagccccc aagggaacag cccttgcctc ctgccccgtt
     1681 agccatgcct cacatcaaac ccccacccac cacaccaatt ccccagcttc cagcaccaca
     1741 ggcccacaaa catccgcctc acctctcagg cccctccccc ttctcaatga atgccaatct
     1801 gccaccccca ccagccctga agcccctcag ctcactgtcc acacaccatc ctccctcagc
     1861 ccaccctcca cccctacagc ttatgcctca gagccagccc ttgccctctt cacccgccca
     1921 gccccctggg ctgacccaga gtcagagcct cccaccccct gctgcctccc accctaccac
     1981 tggcggcctc caccaggtgc cctcgcaatc cccattcccc cagcaccctt ttgtacctgg
     2041 aggcccccct cccatcaccc caccctcctg cccccccact tccacccctc ctgcggggcc
     2101 cagctcctca tcacagccac cctgctctgc tgctgtgtct tctggaggca atgttccagg
     2161 ggcgccatct tgcccactcc ctgctgtgca gatcaaggaa gaggctctgg atgaagccga
     2221 ggagccagag agccctcctc caccccccag gagcccatcc cctgagccta ctgtagtgga
     2281 cacccccagc catgctagcc agtctgccag gttctacaaa cacctggacc ggggctacaa
     2341 ctcgtgtgca cggacagacc tgtacttcat gcctctggct ggatccaaac tagccaagaa
     2401 gagggaggag gccattgaga aggccaagcg ggaggctgaa cagaaagccc gagaggaacg
     2461 agagcgagag aaagagaagg aaaaagagcg agagcgggag agagagcggg aacgggaagc
     2521 agagcgcgct gctcagaagg cttctagctc agcacatgaa ggccgtctta gtgaccctca
     2581 gctcagtggt ccaggtcaca tgcgaccctc cttcgagcca ccaccgacca caattgctgc
     2641 tgtgccccca tatattgggc ctgacacacc tgccctccgg acactgagcg aatatgctcg
     2701 gccacatgtc atgtctccca ccaaccgtaa ccaccccttc tacatgcccc tcaatcccac
     2761 cgaccccctc ctggcctacc acatgcctgg cctgtacaat gttgacccca ccatccggga
     2821 gcgggagctc cgagaacgtg agatcagaga gcgcgagatc cgggagcggg aattgcggga
     2881 gaggatgaag ccaggctttg aggtgaagcc cccagagctg gaccccctgc acccagccac
     2941 caaccccatg gagcattttg cccggcacag cgccctcacc atccctcctg cagctggccc
     3001 ccaccccttt gcctctttcc acccgggcct caaccctttg gagcgggaga gactggcgct
     3061 agcaggtcct cagctgcggc ctgagatgag ttacccagac agactggcag ctgagcgcat
     3121 ccatgccgag cgtatggcgt cactcaccag cgaccccctg gcacgactgc agatgttcaa
     3181 tgttactcca caccaccacc agcattcaca catccactcc cacctccacc tccaccagca
     3241 ggatcctctc caccaaggtt cagcaggccc agttcacccc ctggttgacc ccctgactgc
     3301 tggccctcac ttagctcgct tcccctaccc tccgggcacc ctccccaatc ctctacttgg
     3361 acagcccccc cacgagcacg agatgctacg ccacccagtt tttgcagagc ctgttttgcg
     3421 cttggcaggc accccctacc cccgagacct gcctggggct attccacccc ccatgtcagc
     3481 ggcccaccag cttcaggcca tgcatgccca gtcagcagag ctgcagagac tagccatgga
     3541 gcagcagtgg ctgcatggac atccacacat gcatggtggc catctaccca gtcaggagga
     3601 ttattacagt cgactgaaga aggaaggaga caagcagtta taagttattt atttgttatg
     3661 ctgctgtgga aaccccagtt ctagggggca gaaacaggac ttttacatct agtaggcgct
     3721 gcaagagcaa agaggaatat cgtctaaaga tttctctata tttaaaccca caactaaaaa
     3781 cacatctgca tagtagtgtt tgtttgttga gaggatttcc tgagaccagt tgaggtctcc
     3841 ctgcatgaca gtcccccaga aacggcgtgt cctgggctgg actgacaccc agaaaacgta
     3901 cctgcgatct tggggtttgg ctttagttct cttttccttg atttctcagt aggtgctaga
     3961 gtccgttcac acccttcact gtgcgcgcag acactgaggc acgtgggctc tggaacccac
     4021 ggggtttgca aagaggcggc gtatgagttt gaaatccaag agctataatt tttaaaaaat
     4081 cttttatttt actacattgt aggaaatctt cataatttga gacagttctg cagcatggct
     4141 ttttacatct gtaaataaat aattttagaa gtcttttttt ctgtccacag acgactattc
     4201 tgatctattt tttccagcca tgtcacaaag tgtgaattcc taccagctat tgacagaata
     4261 cagagttgat tttttaataa aaagttatat ataattatcc ctttaattaa agggaacaga
     4321 tgggcgtttc tgtttctagt ttgaagcagg caggagcttg ggactaggtt tggtcacagc
     4381 agtgagcacc caagggttgg cagggacagt gttacaggct ctttgttttg ctgctttgat
     4441 ttcatttctg tctgtccctc gcatgtgcag tggcaggcgt gtttgagcga gcctccttcc
     4501 tcattcatag gggttcagtg ttgactctgt tccctggtgt ccccactgtc ctgtgtctgg
     4561 tatagaaagc gcatgtttat gtgtatgtgt ctgatgataa gtttccctag agtgttatgc
     4621 acatgtttga ttgttctaga taaattgtca taaacattct aggaagctca agaaaatgat
     4681 gcagtaccca gcacatgaaa gacctatgcc atgtgcttgc caaaggaatg ttagagtctg
     4741 ctcatgtgca tgtcaccacg ccaagccgtg ccagccacag actgagagac ttcagagtga
     4801 ggaaccccct agggtcacta tggttgtatg gttgtgctca gggctatgca gcaggctgtg
     4861 caggaagctg tgtcctgcgt ttcctcctgg aataggaatt aaggtcctgg ttgaagcagg
     4921 ttcccctggg aagtcctctc cagcaggcct tcggagcaga actgactcct gccccgctgt
     4981 ccctgatgga gttctcctac cagagctgtg accctccctt ggactctgga atgcagtggt
     5041 tgcatttaga aacagctagc tagtcaagga ccatcgatgg cagcagacga ggtgtgtcct
     5101 ggccctgtgg agagaagtgt gtgtggttca gctggcattc actccgctcc aggctctgac
     5161 tcaggtggca gagcctcatg ctccctgagc catgcatggg gcaactagga tccatttgtc
     5221 cgttggagat gtttgtagct tttttgtttt gttttttaac tttgtttttc tcattccatt
     5281 tctgccttaa ttttggttct tcataggagg caagctcaaa ttaacctttt gtcatcagac
     5341 cttctggccg ccttggcatg aaggcatctt tttcctctgg ggttggtgac atggcctccg
     5401 gatggtctgc ctgccctcca gccctctgga ctgaggaaga cccccacagg atctggacag
     5461 gcaggtcctt tctgtcccac gccaccacct ccttcccctt ttaactgagt ctgccgttca
     5521 gttaaccctt tatttccttt ctagtaccca tttccaaaga gaaagagtga agtactttga
     5581 agtctgtact tgaaatctgt ctggcagtgt ttccctatta gttctgggtt tctcccctgt
     5641 cccaaggtga agcgctgaga gccttcattt ctccgtgact gacagcagtt cgtttggagg
     5701 ccctggacct ttgtggcgtc tttgaagcct ggcctcttgg cttccttttg gattttcctt
     5761 gctttgattt gaagtttggg tttgctttcc gtgttctgta cgtatcttgt tcagtgtcgt
     5821 caaggttgag cttcacgtct cactgcagtg gagcgagcgg acattctgat cgctgcattt
     5881 ctttagatct cggagctaaa tgtatatatg agtagttcgc aatgagataa cacagtgtaa
     5941 acagtagaca cccagaaaat cgtgacttct gtgttttctc catttgagta ttttgtaatt
     6001 tttttgaaat atttgtggac ataaataaaa ccaagctaca ctacagca
//
