LOCUS       XM_008764200            7738 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus arginine-glutamic acid dipeptide
            repeats (Rere), transcript variant X4, mRNA.
ACCESSION   XM_008764200
VERSION     XM_008764200.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008764200.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008764200.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7738
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7738
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /note="arginine-glutamic acid dipeptide repeats; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 72 ESTs, 2 long SRA reads, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 114 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
     CDS             657..5333
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X3"
                     /protein_id="XP_008762422.1"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
                     /translation="MTADKDKDKDKEKDRDRDRDRERDKRDKARESENARPRRSCTLE
                     GGAKNYAESDHSEDEDNDNGATTEESARKSRKKPPKKKSRYERTDTGEITSYITEDDV
                     VYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPAPALCDPPACSLPVASQP
                     PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITD
                     PVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETR
                     RLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVSDCDLLMYLRAAR
                     SMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESSYDAGKALQRLVKKPVPKLIE
                     KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHR
                     RHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSEQELKGYACRH
                     CFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEEDDGLS
                     GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPVNEDVRSSGRNSPSAASTSSNDSK
                     AEAVKKSAKKVKEEAASPLKNTKRQREKVASDTEDTDRATSKKTKTQEISRPNSPSEG
                     EGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQTQPPAL
                     QAPSGAASAPSTAPPGTTQLPTPGPTPSATTVPPQGSPATSQPPNQTQSTVAPAAHTL
                     IQQTPTLHPPRLPSPHPPLQPMTAPPSQNSAQPHPQPSLHGQGPPGPHSLQTGPLLQH
                     PGPPQPFGLTPQSSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPL
                     AMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPP
                     SAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQVPSQSPFPQHP
                     FVPGGPPPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGNVPGAPSCPLPAVQIKEE
                     ALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPL
                     AGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAKASSSA
                     HEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNR
                     NHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFE
                     VKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASFHPGLNPLERERLALAGPQL
                     RPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPL
                     HQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD
                     LPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKK
                     EGDKQL"
ORIGIN      
        1 ggcggcgggt cggcgcagca gccccgcggc tccgccacca tcgcggaggt gccgctgctc
       61 ccacagacgc tcgcgagccg ccccccgcgc tccgcagcct ctagcccctc cgggcctcgg
      121 tccccgcctt cttccccgcg cctcgtcccc tcacgcgctc cccaccttgt ctccgcctcg
      181 ttttctctcc tggttgaagg gaaggaaaaa aaaaacatct accatcctcc tgtgggagcc
      241 tctcgccctc tgggggaaaa aaaaatccac aaaaccagac atggtcctgg gctcccactg
      301 ctgaaggctt ggcccacccg aggaggtcga agtcccggca gggaagcccc gcagcccccc
      361 ggcgtcgcat ccccgcgggc cggctccctc ggccccgcgc ccgccgcctt cggtccgccg
      421 ccggtccctg cggcctccca cccggtccct gcacttttcc ccggagcccg gccgccaccc
      481 ctctcattga tggtgtagcg tctgagggga agcatttttg aaacgttggg gttgttggag
      541 tggttggatt ttccctggaa ttgagtaaga aattcagaag actgaagccc aggctcactg
      601 tctacctttc acggaggcct agccgtgaga ggacagaaga aggcacgtgg agaatcatga
      661 cagctgacaa agataaagac aaagacaaag agaaggaccg ggaccgggac cgggaccgag
      721 agagagataa aagagacaaa gctagggaga gcgagaacgc caggcctcgg aggagctgca
      781 cgttggaggg aggagccaag aactatgctg aaagtgacca cagtgaggac gaagacaacg
      841 acaacggagc caccacggag gagtccgcca ggaagagcag aaagaaacct ccgaaaaaaa
      901 agtcccgcta cgagaggaca gacactggcg agataacgtc ttacatcact gaggatgatg
      961 ttgtttacag accaggagac tgcgtgtata tcgagagtcg gcggccaaac acaccgtatt
     1021 tcatctgcag catccaagac ttcaaactgg tccacaactc ccaggcctgt tgcagatctc
     1081 cagctcctgc tttgtgtgat cccccagcat gctctctgcc ggtggcatca cagccaccac
     1141 agcacctttc tgaagccggg agagggcctg tagggagtaa gagggaccat ctactcatga
     1201 acgtcaaatg gtactaccgt cagtctgaag ttccagattc tgtctatcag catttggttc
     1261 aggaccggca taatgaaaac gactctggaa gagaacttgt catcacagat ccagtcatca
     1321 agaaccggga gctcttcatt tctgattatg ttgacaccta ccatgctgct gccctgagag
     1381 ggaagtgcaa catctcccat ttttccgaca tatttgctgc tcgtgaattt aaagcccgag
     1441 tggactcgtt tttctacata ttaggctaca accctgagac aaggaggctg aatagtaccc
     1501 aaggagaaat tcgagttggc cctagccatc aggccaaact tccagatttg cagccatttc
     1561 cttctccaga tggtgacact gtgactcagc atgaggaact tgtctggatg cctggagtca
     1621 gtgactgtga cctcctcatg tacttgaggg cagcaaggag catggcagcc ttcgcaggaa
     1681 tgtgtgacgg aggttccaca gaggatggct gtgtcgcagc gtctcgggat gacaccactc
     1741 tcaatgcact gaacacacta catgaaagca gttatgatgc cggcaaagcc ctgcagcgcc
     1801 tggtgaagaa gcctgtgccc aagctgatcg agaagtgctg gacagaggat gaagtgaaac
     1861 gcttcgttaa ggggctccga cagtacggca agaacttctt cagaatcaga aaggagctgc
     1921 ttcccaataa ggaaaccggg gaactgatta ccttctatta ctactggaag aaaacaccag
     1981 aggcagccag ctcccgtgcc caccgccggc accgcaggca ggctgtgttc agaagaatta
     2041 agactcgcac agcgtccacc cctgtcaaca cgccctccag acctccttcc agtgaattct
     2101 tggatctgag ttcggctagt gaggatgact ttgacagtga ggacagcgag caggagctga
     2161 aggggtacgc ctgccggcac tgcttcacca ccacctccaa agactggcac cacgggggcc
     2221 gagaaaacat cctgctgtgc acagactgcc gcatccactt caagaagtac ggtgagctgc
     2281 cacccatcga gaagcccgtg gaccccccgc ccttcatgtt caagcctgtc aaggaggagg
     2341 acgatgggct cagtgggaag catagcatga ggactcggcg gagtcggggc tcgatgtcta
     2401 cactccgcag tggtcggaag aagcagcctg ccagtcctga tggccgcgcc tcacctgtca
     2461 atgaggacgt gcgatccagt ggccggaact cccccagcgc tgccagcact tccagcaatg
     2521 acagcaaagc agaggctgtg aagaagtcgg ccaagaaagt gaaggaagag gctgcgtccc
     2581 ctctgaagaa caccaagcgc cagcgggaga aggtggcctc cgacacagaa gacactgaca
     2641 gggccacctc caaaaagaca aagacccagg agatcagccg ccctaactct ccctctgaag
     2701 gtgaggggga gagttccgac agtcgcagtg tcaatgatga gggcagcagt gacccaaaag
     2761 acatcgacca ggataatcgc agcacgtccc ccagtatccc cagccctcaa gataatgaga
     2821 gcgactcgga ctcatcagca cagcagcaga tgttgcagac ccagcctcca gccttgcaag
     2881 ctcccagtgg ggctgcctct gctccctcca cagcccctcc agggacaacc cagcttccca
     2941 ccccagggcc tacaccctct gctactacag tccctccaca gggctcccct gcaacctcac
     3001 agccccctaa ccagactcag tctacagtgg cacctgcagc ccacaccctc atccagcaga
     3061 cgcccaccct gcatccccct cggctgccct cacctcatcc tccactgcag cctatgactg
     3121 caccacctag ccagaactct gcacaacctc acccccagcc ctccttgcat ggtcagggcc
     3181 ctcctggccc tcacagccta cagactggac ccctactaca gcacccagga cctcctcagc
     3241 cctttggact gactccccag tcctcccaag gtcagggccc tctgggtccc tccccagcag
     3301 cagcccatcc tcacagcacc atacagcttc cagcctctca gtcggcactg cagcctcaac
     3361 agcccccaag ggaacagccc ttgcctcctg ccccgttagc catgcctcac atcaaacccc
     3421 cacccaccac accaattccc cagcttccag caccacaggc ccacaaacat ccgcctcacc
     3481 tctcaggccc ctcccccttc tcaatgaatg ccaatctgcc acccccacca gccctgaagc
     3541 ccctcagctc actgtccaca caccatcctc cctcagccca ccctccaccc ctacagctta
     3601 tgcctcagag ccagcccttg ccctcttcac ccgcccagcc ccctgggctg acccagagtc
     3661 agagcctccc accccctgct gcctcccacc ctaccactgg cggcctccac caggtgccct
     3721 cgcaatcccc attcccccag cacccttttg tacctggagg cccccctccc atcaccccac
     3781 cctcctgccc ccccacttcc acccctcctg cggggcccag ctcctcatca cagccaccct
     3841 gctctgctgc tgtgtcttct ggaggcaatg ttccaggggc gccatcttgc ccactccctg
     3901 ctgtgcagat caaggaagag gctctggatg aagccgagga gccagagagc cctcctccac
     3961 cccccaggag cccatcccct gagcctactg tagtggacac ccccagccat gctagccagt
     4021 ctgccaggtt ctacaaacac ctggaccggg gctacaactc gtgtgcacgg acagacctgt
     4081 acttcatgcc tctggctgga tccaaactag ccaagaagag ggaggaggcc attgagaagg
     4141 ccaagcggga ggctgaacag aaagcccgag aggaacgaga gcgagagaaa gagaaggaaa
     4201 aagagcgaga gcgggagaga gagcgggaac gggaagcaga gcgcgctgct aaggcttcta
     4261 gctcagcaca tgaaggccgt cttagtgacc ctcagctcag tggtccaggt cacatgcgac
     4321 cctccttcga gccaccaccg accacaattg ctgctgtgcc cccatatatt gggcctgaca
     4381 cacctgccct ccggacactg agcgaatatg ctcggccaca tgtcatgtct cccaccaacc
     4441 gtaaccaccc cttctacatg cccctcaatc ccaccgaccc cctcctggcc taccacatgc
     4501 ctggcctgta caatgttgac cccaccatcc gggagcggga gctccgagaa cgtgagatca
     4561 gagagcgcga gatccgggag cgggaattgc gggagaggat gaagccaggc tttgaggtga
     4621 agcccccaga gctggacccc ctgcacccag ccaccaaccc catggagcat tttgcccggc
     4681 acagcgccct caccatccct cctgcagctg gcccccaccc ctttgcctct ttccacccgg
     4741 gcctcaaccc tttggagcgg gagagactgg cgctagcagg tcctcagctg cggcctgaga
     4801 tgagttaccc agacagactg gcagctgagc gcatccatgc cgagcgtatg gcgtcactca
     4861 ccagcgaccc cctggcacga ctgcagatgt tcaatgttac tccacaccac caccagcatt
     4921 cacacatcca ctcccacctc cacctccacc agcaggatcc tctccaccaa ggttcagcag
     4981 gcccagttca ccccctggtt gaccccctga ctgctggccc tcacttagct cgcttcccct
     5041 accctccggg caccctcccc aatcctctac ttggacagcc cccccacgag cacgagatgc
     5101 tacgccaccc agtttttggc accccctacc cccgagacct gcctggggct attccacccc
     5161 ccatgtcagc ggcccaccag cttcaggcca tgcatgccca gtcagcagag ctgcagagac
     5221 tagccatgga gcagcagtgg ctgcatggac atccacacat gcatggtggc catctaccca
     5281 gtcaggagga ttattacagt cgactgaaga aggaaggaga caagcagtta taagttattt
     5341 atttgttatg ctgctgtgga aaccccagtt ctagggggca gaaacaggac ttttacatct
     5401 agtaggcgct gcaagagcaa agaggaatat cgtctaaaga tttctctata tttaaaccca
     5461 caactaaaaa cacatctgca tagtagtgtt tgtttgttga gaggatttcc tgagaccagt
     5521 tgaggtctcc ctgcatgaca gtcccccaga aacggcgtgt cctgggctgg actgacaccc
     5581 agaaaacgta cctgcgatct tggggtttgg ctttagttct cttttccttg atttctcagt
     5641 aggtgctaga gtccgttcac acccttcact gtgcgcgcag acactgaggc acgtgggctc
     5701 tggaacccac ggggtttgca aagaggcggc gtatgagttt gaaatccaag agctataatt
     5761 tttaaaaaat cttttatttt actacattgt aggaaatctt cataatttga gacagttctg
     5821 cagcatggct ttttacatct gtaaataaat aattttagaa gtcttttttt ctgtccacag
     5881 acgactattc tgatctattt tttccagcca tgtcacaaag tgtgaattcc taccagctat
     5941 tgacagaata cagagttgat tttttaataa aaagttatat ataattatcc ctttaattaa
     6001 agggaacaga tgggcgtttc tgtttctagt ttgaagcagg caggagcttg ggactaggtt
     6061 tggtcacagc agtgagcacc caagggttgg cagggacagt gttacaggct ctttgttttg
     6121 ctgctttgat ttcatttctg tctgtccctc gcatgtgcag tggcaggcgt gtttgagcga
     6181 gcctccttcc tcattcatag gggttcagtg ttgactctgt tccctggtgt ccccactgtc
     6241 ctgtgtctgg tatagaaagc gcatgtttat gtgtatgtgt ctgatgataa gtttccctag
     6301 agtgttatgc acatgtttga ttgttctaga taaattgtca taaacattct aggaagctca
     6361 agaaaatgat gcagtaccca gcacatgaaa gacctatgcc atgtgcttgc caaaggaatg
     6421 ttagagtctg ctcatgtgca tgtcaccacg ccaagccgtg ccagccacag actgagagac
     6481 ttcagagtga ggaaccccct agggtcacta tggttgtatg gttgtgctca gggctatgca
     6541 gcaggctgtg caggaagctg tgtcctgcgt ttcctcctgg aataggaatt aaggtcctgg
     6601 ttgaagcagg ttcccctggg aagtcctctc cagcaggcct tcggagcaga actgactcct
     6661 gccccgctgt ccctgatgga gttctcctac cagagctgtg accctccctt ggactctgga
     6721 atgcagtggt tgcatttaga aacagctagc tagtcaagga ccatcgatgg cagcagacga
     6781 ggtgtgtcct ggccctgtgg agagaagtgt gtgtggttca gctggcattc actccgctcc
     6841 aggctctgac tcaggtggca gagcctcatg ctccctgagc catgcatggg gcaactagga
     6901 tccatttgtc cgttggagat gtttgtagct tttttgtttt gttttttaac tttgtttttc
     6961 tcattccatt tctgccttaa ttttggttct tcataggagg caagctcaaa ttaacctttt
     7021 gtcatcagac cttctggccg ccttggcatg aaggcatctt tttcctctgg ggttggtgac
     7081 atggcctccg gatggtctgc ctgccctcca gccctctgga ctgaggaaga cccccacagg
     7141 atctggacag gcaggtcctt tctgtcccac gccaccacct ccttcccctt ttaactgagt
     7201 ctgccgttca gttaaccctt tatttccttt ctagtaccca tttccaaaga gaaagagtga
     7261 agtactttga agtctgtact tgaaatctgt ctggcagtgt ttccctatta gttctgggtt
     7321 tctcccctgt cccaaggtga agcgctgaga gccttcattt ctccgtgact gacagcagtt
     7381 cgtttggagg ccctggacct ttgtggcgtc tttgaagcct ggcctcttgg cttccttttg
     7441 gattttcctt gctttgattt gaagtttggg tttgctttcc gtgttctgta cgtatcttgt
     7501 tcagtgtcgt caaggttgag cttcacgtct cactgcagtg gagcgagcgg acattctgat
     7561 cgctgcattt ctttagatct cggagctaaa tgtatatatg agtagttcgc aatgagataa
     7621 cacagtgtaa acagtagaca cccagaaaat cgtgacttct gtgttttctc catttgagta
     7681 ttttgtaatt tttttgaaat atttgtggac ataaataaaa ccaagctaca ctacagca
//
