LOCUS       XM_008764199            8534 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus arginine-glutamic acid dipeptide
            repeats (Rere), transcript variant X2, mRNA.
ACCESSION   XM_008764199
VERSION     XM_008764199.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008764199.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008764199.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8534
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /note="arginine-glutamic acid dipeptide repeats; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 68 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 35 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
     CDS             1426..6129
                     /gene="Rere"
                     /gene_synonym="Arp"
                     /codon_start=1
                     /product="arginine-glutamic acid dipeptide repeats protein
                     isoform X1"
                     /protein_id="XP_008762421.1"
                     /db_xref="GeneID:116665"
                     /db_xref="RGD:629475"
                     /translation="MTADKDKDKDKEKDRDRDRDRERDKRDKARESENARPRRSCTLE
                     GGAKNYAESDHSEDEDNDNGATTEESARKSRKKPPKKKSRYERTDTGEITSYITEDDV
                     VYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPAPALCDPPACSLPVASQP
                     PQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNENDSGRELVITD
                     PVIKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETR
                     RLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVSDCDLLMYLRAAR
                     SMAAFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESSYDAGKALQRLVKKPVPKLIE
                     KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKKTPEAASSRAHR
                     RHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSEDSEQELKGYACRH
                     CFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPVDPPPFMFKPVKEEDDGLS
                     GKHSMRTRRSRGSMSTLRSGRKKQPASPDGRASPVNEDVRSSGRNSPSAASTSSNDSK
                     AEAVKKSAKKVKEEAASPLKNTKRQREKVASDTEDTDRATSKKTKTQEISRPNSPSEG
                     EGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQTQPPAL
                     QAPSGAASAPSTAPPGTTQLPTPGPTPSATTVPPQGSPATSQPPNQTQSTVAPAAHTL
                     IQQTPTLHPPRLPSPHPPLQPMTAPPSQNSAQPHPQPSLHGQGPPGPHSLQTGPLLQH
                     PGPPQPFGLTPQSSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPL
                     AMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPP
                     SAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGGLHQVPSQSPFPQHP
                     FVPGGPPPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGNVPGAPSCPLPAVQIKEE
                     ALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPL
                     AGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAQKASSS
                     AHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTN
                     RNHPFYMPLNPTDPLLAYHMPGLYNVDPTIRERELREREIREREIRERELRERMKPGF
                     EVKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASFHPGLNPLERERLALAGPQ
                     LRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDP
                     LHQGSAGPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFAEPVLR
                     LAGTPYPRDLPGAIPPPMSAAHQLQAMHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQ
                     EDYYSRLKKEGDKQL"
ORIGIN      
        1 gtactttaaa ttcacattct tttaggagtc cttaagaatt cctagaatgt ttcctttata
       61 aggaccaaat aatctttgct gttactgata agcagtagag tacatggtac aaataaagtt
      121 aggtttaatt ttaataaaat ttagcaagtt gataatattt tgaatagact tcattgggag
      181 ttggggaaga aattttgaaa ttgtcagttg gtgattctct tcagatgaat ttacaagatg
      241 agttaatgat gaagcctgga atctagctgg tgagttgttt atttaaagcc acatgacaaa
      301 gaatgtgcct tttattggct ttattaggtg agtttcaatc aagtccagct taacctacat
      361 tttctgcagc agatggatct ttatttcctt ttggaaacgg ttgggagaaa tttaatcaag
      421 tcactaagag aaattcttaa attataagga aaacgggggt cagaaatgtt tgccatcaaa
      481 caatgctgct ctcctgtgat ctttgaaaca agtgtttggc tgtctgtgga ccatggctgt
      541 gtcatctgca tttgttaggc atcacaggca gtttagcatt agtattcctg gttgaagctg
      601 aggctgctct aggatgtgtg aactgctgat cacaatcggg gatgcgctgc ctctttaata
      661 tcttgcttgc agatgcattt tctagctgac cacgctatta agagctgcca tcaatcacgc
      721 agccttgcag ttccggctgt tgggaacgct gggagcattg ggggaacctg agggtggcgg
      781 ggcaggctac aattgcggca ggcattgtgt gtgtgctagc tccatggtgg cggcctgggc
      841 gcgtgcggaa ccggccttat tccagcccgg gttttgctgg ccgccgtcgc gctccggcgg
      901 ctctttctct ctagtctggg tcactggcac gtggcagtgc tggccaggcc gctggggctg
      961 aaggagttcg agtgagcgct gtggccgggg gcccggcgca tccctagtcg agggcccgtg
     1021 cctgtagcag ccccgaccca cccgcgcggc cggcggccgg cggccggcct ccttttgttt
     1081 ggaggtgcaa ttcaccgccc agccctgccc gcctcctcgg ctccgcccgc ccggctctcg
     1141 ccctggggct tgcgggaccc cgcgccccag gaggaggact ggcccagccg tgcaggcaag
     1201 tggccggcgg ccttgtgctg cgaggcaacc caggtctcgg gctggaagtt ggacacacaa
     1261 gtggcgtgtg tgctcccgga gcatttttga aacgttgggg ttgttggagt ggttggattt
     1321 tccctggaat tgagtaagaa attcagaaga ctgaagccca ggctcactgt ctacctttca
     1381 cggaggccta gccgtgagag gacagaagaa ggcacgtgga gaatcatgac agctgacaaa
     1441 gataaagaca aagacaaaga gaaggaccgg gaccgggacc gggaccgaga gagagataaa
     1501 agagacaaag ctagggagag cgagaacgcc aggcctcgga ggagctgcac gttggaggga
     1561 ggagccaaga actatgctga aagtgaccac agtgaggacg aagacaacga caacggagcc
     1621 accacggagg agtccgccag gaagagcaga aagaaacctc cgaaaaaaaa gtcccgctac
     1681 gagaggacag acactggcga gataacgtct tacatcactg aggatgatgt tgtttacaga
     1741 ccaggagact gcgtgtatat cgagagtcgg cggccaaaca caccgtattt catctgcagc
     1801 atccaagact tcaaactggt ccacaactcc caggcctgtt gcagatctcc agctcctgct
     1861 ttgtgtgatc ccccagcatg ctctctgccg gtggcatcac agccaccaca gcacctttct
     1921 gaagccggga gagggcctgt agggagtaag agggaccatc tactcatgaa cgtcaaatgg
     1981 tactaccgtc agtctgaagt tccagattct gtctatcagc atttggttca ggaccggcat
     2041 aatgaaaacg actctggaag agaacttgtc atcacagatc cagtcatcaa gaaccgggag
     2101 ctcttcattt ctgattatgt tgacacctac catgctgctg ccctgagagg gaagtgcaac
     2161 atctcccatt tttccgacat atttgctgct cgtgaattta aagcccgagt ggactcgttt
     2221 ttctacatat taggctacaa ccctgagaca aggaggctga atagtaccca aggagaaatt
     2281 cgagttggcc ctagccatca ggccaaactt ccagatttgc agccatttcc ttctccagat
     2341 ggtgacactg tgactcagca tgaggaactt gtctggatgc ctggagtcag tgactgtgac
     2401 ctcctcatgt acttgagggc agcaaggagc atggcagcct tcgcaggaat gtgtgacgga
     2461 ggttccacag aggatggctg tgtcgcagcg tctcgggatg acaccactct caatgcactg
     2521 aacacactac atgaaagcag ttatgatgcc ggcaaagccc tgcagcgcct ggtgaagaag
     2581 cctgtgccca agctgatcga gaagtgctgg acagaggatg aagtgaaacg cttcgttaag
     2641 gggctccgac agtacggcaa gaacttcttc agaatcagaa aggagctgct tcccaataag
     2701 gaaaccgggg aactgattac cttctattac tactggaaga aaacaccaga ggcagccagc
     2761 tcccgtgccc accgccggca ccgcaggcag gctgtgttca gaagaattaa gactcgcaca
     2821 gcgtccaccc ctgtcaacac gccctccaga cctccttcca gtgaattctt ggatctgagt
     2881 tcggctagtg aggatgactt tgacagtgag gacagcgagc aggagctgaa ggggtacgcc
     2941 tgccggcact gcttcaccac cacctccaaa gactggcacc acgggggccg agaaaacatc
     3001 ctgctgtgca cagactgccg catccacttc aagaagtacg gtgagctgcc acccatcgag
     3061 aagcccgtgg accccccgcc cttcatgttc aagcctgtca aggaggagga cgatgggctc
     3121 agtgggaagc atagcatgag gactcggcgg agtcggggct cgatgtctac actccgcagt
     3181 ggtcggaaga agcagcctgc cagtcctgat ggccgcgcct cacctgtcaa tgaggacgtg
     3241 cgatccagtg gccggaactc ccccagcgct gccagcactt ccagcaatga cagcaaagca
     3301 gaggctgtga agaagtcggc caagaaagtg aaggaagagg ctgcgtcccc tctgaagaac
     3361 accaagcgcc agcgggagaa ggtggcctcc gacacagaag acactgacag ggccacctcc
     3421 aaaaagacaa agacccagga gatcagccgc cctaactctc cctctgaagg tgagggggag
     3481 agttccgaca gtcgcagtgt caatgatgag ggcagcagtg acccaaaaga catcgaccag
     3541 gataatcgca gcacgtcccc cagtatcccc agccctcaag ataatgagag cgactcggac
     3601 tcatcagcac agcagcagat gttgcagacc cagcctccag ccttgcaagc tcccagtggg
     3661 gctgcctctg ctccctccac agcccctcca gggacaaccc agcttcccac cccagggcct
     3721 acaccctctg ctactacagt ccctccacag ggctcccctg caacctcaca gccccctaac
     3781 cagactcagt ctacagtggc acctgcagcc cacaccctca tccagcagac gcccaccctg
     3841 catccccctc ggctgccctc acctcatcct ccactgcagc ctatgactgc accacctagc
     3901 cagaactctg cacaacctca cccccagccc tccttgcatg gtcagggccc tcctggccct
     3961 cacagcctac agactggacc cctactacag cacccaggac ctcctcagcc ctttggactg
     4021 actccccagt cctcccaagg tcagggccct ctgggtccct ccccagcagc agcccatcct
     4081 cacagcacca tacagcttcc agcctctcag tcggcactgc agcctcaaca gcccccaagg
     4141 gaacagccct tgcctcctgc cccgttagcc atgcctcaca tcaaaccccc acccaccaca
     4201 ccaattcccc agcttccagc accacaggcc cacaaacatc cgcctcacct ctcaggcccc
     4261 tcccccttct caatgaatgc caatctgcca cccccaccag ccctgaagcc cctcagctca
     4321 ctgtccacac accatcctcc ctcagcccac cctccacccc tacagcttat gcctcagagc
     4381 cagcccttgc cctcttcacc cgcccagccc cctgggctga cccagagtca gagcctccca
     4441 ccccctgctg cctcccaccc taccactggc ggcctccacc aggtgccctc gcaatcccca
     4501 ttcccccagc acccttttgt acctggaggc ccccctccca tcaccccacc ctcctgcccc
     4561 cccacttcca cccctcctgc ggggcccagc tcctcatcac agccaccctg ctctgctgct
     4621 gtgtcttctg gaggcaatgt tccaggggcg ccatcttgcc cactccctgc tgtgcagatc
     4681 aaggaagagg ctctggatga agccgaggag ccagagagcc ctcctccacc ccccaggagc
     4741 ccatcccctg agcctactgt agtggacacc cccagccatg ctagccagtc tgccaggttc
     4801 tacaaacacc tggaccgggg ctacaactcg tgtgcacgga cagacctgta cttcatgcct
     4861 ctggctggat ccaaactagc caagaagagg gaggaggcca ttgagaaggc caagcgggag
     4921 gctgaacaga aagcccgaga ggaacgagag cgagagaaag agaaggaaaa agagcgagag
     4981 cgggagagag agcgggaacg ggaagcagag cgcgctgctc agaaggcttc tagctcagca
     5041 catgaaggcc gtcttagtga ccctcagctc agtggtccag gtcacatgcg accctccttc
     5101 gagccaccac cgaccacaat tgctgctgtg cccccatata ttgggcctga cacacctgcc
     5161 ctccggacac tgagcgaata tgctcggcca catgtcatgt ctcccaccaa ccgtaaccac
     5221 cccttctaca tgcccctcaa tcccaccgac cccctcctgg cctaccacat gcctggcctg
     5281 tacaatgttg accccaccat ccgggagcgg gagctccgag aacgtgagat cagagagcgc
     5341 gagatccggg agcgggaatt gcgggagagg atgaagccag gctttgaggt gaagccccca
     5401 gagctggacc ccctgcaccc agccaccaac cccatggagc attttgcccg gcacagcgcc
     5461 ctcaccatcc ctcctgcagc tggcccccac ccctttgcct ctttccaccc gggcctcaac
     5521 cctttggagc gggagagact ggcgctagca ggtcctcagc tgcggcctga gatgagttac
     5581 ccagacagac tggcagctga gcgcatccat gccgagcgta tggcgtcact caccagcgac
     5641 cccctggcac gactgcagat gttcaatgtt actccacacc accaccagca ttcacacatc
     5701 cactcccacc tccacctcca ccagcaggat cctctccacc aaggttcagc aggcccagtt
     5761 caccccctgg ttgaccccct gactgctggc cctcacttag ctcgcttccc ctaccctccg
     5821 ggcaccctcc ccaatcctct acttggacag cccccccacg agcacgagat gctacgccac
     5881 ccagtttttg cagagcctgt tttgcgcttg gcaggcaccc cctacccccg agacctgcct
     5941 ggggctattc caccccccat gtcagcggcc caccagcttc aggccatgca tgcccagtca
     6001 gcagagctgc agagactagc catggagcag cagtggctgc atggacatcc acacatgcat
     6061 ggtggccatc tacccagtca ggaggattat tacagtcgac tgaagaagga aggagacaag
     6121 cagttataag ttatttattt gttatgctgc tgtggaaacc ccagttctag ggggcagaaa
     6181 caggactttt acatctagta ggcgctgcaa gagcaaagag gaatatcgtc taaagatttc
     6241 tctatattta aacccacaac taaaaacaca tctgcatagt agtgtttgtt tgttgagagg
     6301 atttcctgag accagttgag gtctccctgc atgacagtcc cccagaaacg gcgtgtcctg
     6361 ggctggactg acacccagaa aacgtacctg cgatcttggg gtttggcttt agttctcttt
     6421 tccttgattt ctcagtaggt gctagagtcc gttcacaccc ttcactgtgc gcgcagacac
     6481 tgaggcacgt gggctctgga acccacgggg tttgcaaaga ggcggcgtat gagtttgaaa
     6541 tccaagagct ataattttta aaaaatcttt tattttacta cattgtagga aatcttcata
     6601 atttgagaca gttctgcagc atggcttttt acatctgtaa ataaataatt ttagaagtct
     6661 ttttttctgt ccacagacga ctattctgat ctattttttc cagccatgtc acaaagtgtg
     6721 aattcctacc agctattgac agaatacaga gttgattttt taataaaaag ttatatataa
     6781 ttatcccttt aattaaaggg aacagatggg cgtttctgtt tctagtttga agcaggcagg
     6841 agcttgggac taggtttggt cacagcagtg agcacccaag ggttggcagg gacagtgtta
     6901 caggctcttt gttttgctgc tttgatttca tttctgtctg tccctcgcat gtgcagtggc
     6961 aggcgtgttt gagcgagcct ccttcctcat tcataggggt tcagtgttga ctctgttccc
     7021 tggtgtcccc actgtcctgt gtctggtata gaaagcgcat gtttatgtgt atgtgtctga
     7081 tgataagttt ccctagagtg ttatgcacat gtttgattgt tctagataaa ttgtcataaa
     7141 cattctagga agctcaagaa aatgatgcag tacccagcac atgaaagacc tatgccatgt
     7201 gcttgccaaa ggaatgttag agtctgctca tgtgcatgtc accacgccaa gccgtgccag
     7261 ccacagactg agagacttca gagtgaggaa ccccctaggg tcactatggt tgtatggttg
     7321 tgctcagggc tatgcagcag gctgtgcagg aagctgtgtc ctgcgtttcc tcctggaata
     7381 ggaattaagg tcctggttga agcaggttcc cctgggaagt cctctccagc aggccttcgg
     7441 agcagaactg actcctgccc cgctgtccct gatggagttc tcctaccaga gctgtgaccc
     7501 tcccttggac tctggaatgc agtggttgca tttagaaaca gctagctagt caaggaccat
     7561 cgatggcagc agacgaggtg tgtcctggcc ctgtggagag aagtgtgtgt ggttcagctg
     7621 gcattcactc cgctccaggc tctgactcag gtggcagagc ctcatgctcc ctgagccatg
     7681 catggggcaa ctaggatcca tttgtccgtt ggagatgttt gtagcttttt tgttttgttt
     7741 tttaactttg tttttctcat tccatttctg ccttaatttt ggttcttcat aggaggcaag
     7801 ctcaaattaa ccttttgtca tcagaccttc tggccgcctt ggcatgaagg catctttttc
     7861 ctctggggtt ggtgacatgg cctccggatg gtctgcctgc cctccagccc tctggactga
     7921 ggaagacccc cacaggatct ggacaggcag gtcctttctg tcccacgcca ccacctcctt
     7981 ccccttttaa ctgagtctgc cgttcagtta accctttatt tcctttctag tacccatttc
     8041 caaagagaaa gagtgaagta ctttgaagtc tgtacttgaa atctgtctgg cagtgtttcc
     8101 ctattagttc tgggtttctc ccctgtccca aggtgaagcg ctgagagcct tcatttctcc
     8161 gtgactgaca gcagttcgtt tggaggccct ggacctttgt ggcgtctttg aagcctggcc
     8221 tcttggcttc cttttggatt ttccttgctt tgatttgaag tttgggtttg ctttccgtgt
     8281 tctgtacgta tcttgttcag tgtcgtcaag gttgagcttc acgtctcact gcagtggagc
     8341 gagcggacat tctgatcgct gcatttcttt agatctcgga gctaaatgta tatatgagta
     8401 gttcgcaatg agataacaca gtgtaaacag tagacaccca gaaaatcgtg acttctgtgt
     8461 tttctccatt tgagtatttt gtaatttttt tgaaatattt gtggacataa ataaaaccaa
     8521 gctacactac agca
//
