LOCUS       NM_001039012            1361 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus retention in endoplasmic reticulum sorting
            receptor 1 (Rer1), mRNA.
ACCESSION   NM_001039012 XM_216607
VERSION     NM_001039012.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1361)
  AUTHORS   Ulyanova,T., Jiang,Y., Padilla,S., Nakamoto,B. and
            Papayannopoulou,T.
  TITLE     Combinatorial and distinct roles of alpha and alpha integrins in
            stress erythropoiesis in mice
  JOURNAL   Blood 117 (3), 975-985 (2011)
   PUBMED   20956802
REFERENCE   2  (bases 1 to 1361)
  AUTHORS   Valkova,C., Albrizio,M., Roder,I.V., Schwake,M., Betto,R.,
            Rudolf,R. and Kaether,C.
  TITLE     Sorting receptor Rer1 controls surface expression of muscle
            acetylcholine receptors by ER retention of unassembled
            alpha-subunits
  JOURNAL   Proc Natl Acad Sci U S A 108 (2), 621-625 (2011)
   PUBMED   21187406
REFERENCE   3  (bases 1 to 1361)
  AUTHORS   Fullekrug,J., Boehm,J., Rottger,S., Nilsson,T., Mieskes,G. and
            Schmitt,H.D.
  TITLE     Human Rer1 is localized to the Golgi apparatus and complements the
            deletion of the homologous Rer1 protein of Saccharomyces cerevisiae
  JOURNAL   Eur J Cell Biol 74 (1), 31-40 (1997)
   PUBMED   9309388
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC100270.1.
            
            On Jan 12, 2006 this sequence version replaced XM_216607.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100270.1, DV721196.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1361
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1361
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /note="retention in endoplasmic reticulum sorting receptor
                     1"
                     /db_xref="GeneID:298675"
                     /db_xref="RGD:1306324"
     exon            1..48
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     exon            49..136
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..646
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /note="RER1 retention in endoplasmic reticulum 1 homolog"
                     /codon_start=1
                     /product="protein RER1"
                     /protein_id="NP_001034101.1"
                     /db_xref="GeneID:298675"
                     /db_xref="RGD:1306324"
                     /translation="MSEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRW
                     VVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLP
                     TKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCI
                     TMKRQIKHMIKYRYIPFTHGKRRYKGKEDVGKTFAS"
     exon            137..241
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     exon            242..341
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     exon            342..420
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     exon            421..556
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
     exon            557..1256
                     /gene="Rer1"
                     /gene_synonym="RGD1306324"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccgcagccg tgagggagac cgcggctcgg ctgcaccgga gctgcgagtt acagaatgtc
       61 tgaaggggac agtgttggag actctgtcca tgggaagccc tcagtggtgt acagattttt
      121 ctcacggctt ggacagattt atcagtcctg gctggacaaa tctaccccct acacagctgt
      181 ccggtgggtc gtgacactgg gcctgagttt tgtctacatg attagagttt acctgttaca
      241 aggttggtac attgtgacct acgccttggg aatttaccac ctaaaccttt tcatagcgtt
      301 cctttctccc aaagtggacc cttccttgat ggaagactca gatgatggcc cttcattacc
      361 aaccaaacaa aatgaggagt ttcgcccctt cattcgaagg cttccagaat tcaaattttg
      421 gcatgcggct acaaaaggca ttcttgtggc tatgatctgt accttctttg aggctttcaa
      481 cgtccccgtg ttctggccga tcctggtgat gtacttcatc atgcttttct gtatcacaat
      541 gaagaggcaa ataaagcaca tgattaaata ccggtacata ccattcacac acgggaagag
      601 gagatacaaa gggaaggagg acgtgggcaa gacatttgct agttagaagc tggactgact
      661 gtcacacgga ctcaagaacg gttttgagcc attgtaacaa tgcctttttc ttcacataaa
      721 gtagttgatt atgaggaagt tgaattttct ttttaagagg agcctcaatg atttgtatct
      781 gaaatatcag gttcttgaag aaactggcat ttaaaccaca ttgcattgac ttcttcttca
      841 gtgatgctca gtgtttggaa tgggcagatg gtagtgagcc atgggcttgt tcagtgtttg
      901 gaatggatga tggtagtgag ccatgggctt gggaggccag gtgggtggca gcccaagagc
      961 ggaagggagg atgggagtgc ggccctgcag agctgccttc ctgaccccgc tgaggccact
     1021 cctctgtgcc agagggacac gccagcctgc ttcctgctgt gagaaggaat gtgccgcttt
     1081 gagggtgatt tcacagagct ctgtggggtt ctcatgccag tgtctgaatc tcatctcact
     1141 agagatgttt ctcaaattgg cctcttacca taatgactca aaactctgtt cttaactacc
     1201 atgattgctt ttgagggcct ggaattataa atatatatta tattttaatt gtttgaaaaa
     1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
