LOCUS       XM_039105212            2533 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RALBP1 associated Eps domain
            containing 1 (Reps1), transcript variant X12, mRNA.
ACCESSION   XM_039105212
VERSION     XM_039105212.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105212.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2533
                     /gene="Reps1"
                     /note="RALBP1 associated Eps domain containing 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 214 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
     CDS             32..2341
                     /gene="Reps1"
                     /codon_start=1
                     /product="ralBP1-associated Eps domain-containing protein
                     1 isoform X12"
                     /protein_id="XP_038961140.1"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
                     /translation="MEGLTLSDAEQKYYSDLFSYCDIESTKKVVVNGRVLELFRAAQL
                     PNDVVLQIMELCGATRLGYFGRSQFYIALKLVAVAQSGFPLRVESINTVKDLPLPRFV
                     ASKNEQESRHAASYSSDAENQSAYAGVIPPPPGRGQVKKAPGSHDAAQPRPSADQQEP
                     ASPVVSPQQSPPTSPHTWRKHNRHPSGGNSERPLAGPGPFWSPFGDAQSGSSAGDAVW
                     SGHSPPPPQENWVSFADTPPTSALLTMHPASVQDQTTVRTVASATTANEIRRQSSSYD
                     DPWKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDK
                     DGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPKLIDLEDSADVGDQPGEVGYPGS
                     PAEAPPSKSPSMPSLNQTWPELNQSSEDTAIVHPVPIRMTPSKIHMQEMELKRSSGDH
                     TNPTSPLLVKPSDLSEENKINSSVKFPSGNTVADGYSSSDSFPSDPEQIGSNGARQRS
                     HSGASPDNTAPPPPPPRPQPSHSRSSSLDMNRTFAVATGQQQAGVVTHPPAVPPRPQP
                     SQAPGPSVHRPVDADGLITHTSTSPQQIPEQPNFADFSQFEVFAASNVSEEQDSEAEK
                     HPEVLPAEKASDPSSSLRVAQADSKIEEKTAAGVPANVSKGTTPLAPPPKPVRRRLKS
                     EDELRPDVDEHTQKTGVLAAVLASQPSIPRSVGKDKKAIQASIRRNKETNTVLARLNS
                     ELQQQLKDVLEERISLEVQLEQLRPFSHL"
ORIGIN      
        1 ggggcggggc ggccgcgggg ccgaggcgaa gatggaaggc ttgacgctga gcgacgccga
       61 gcagaaatac tactcggatc tcttctccta ctgcgacatc gagagcacca agaaggtggt
      121 ggtcaacggg cgagtgctcg agctgttccg ggccgcgcag ctgcccaacg acgtggtcct
      181 ccagatcatg gagctttgcg gtgcaacaag acttggttat tttggaagga gtcagttcta
      241 cattgctttg aagcttgtag ccgttgccca gtctgggttc ccactcagag tggagagtat
      301 aaacactgta aaggatctcc ctcttccacg atttgttgct tcaaagaatg agcaagaatc
      361 ccgccacgca gcctcctact cttcagacgc tgaaaaccag agcgcttacg cgggtgtgat
      421 cccccctcct cctggtaggg gccaggttaa gaaggcaccc ggaagccacg atgcggctca
      481 gcctcgtccg tctgcagatc agcaggaacc tgcatctcca gtagtttcac cccagcagtc
      541 cccaccgact tctccacaca catggaggaa gcacaatcgc caccccagtg gggggaatag
      601 tgagaggcct cttgcaggac cagggccgtt ctggtcgcct tttggtgatg cgcaatcagg
      661 ctcttctgct ggtgatgcgg tgtggtctgg gcattccccc cctccacctc aagaaaactg
      721 ggtcagtttt gcagatactc caccaaccag tgctctttta accatgcatc ctgcttctgt
      781 ccaggaccag acaacagtac gaactgtagc ctcagccaca actgccaatg aaatccgtag
      841 gcaatccagt agttacgatg atccctggaa aataacagat gaacaaagac agtattatgt
      901 aaatcagttt aaaaccattc agcctgatct gaacggattt attccagggt ctgcagctaa
      961 agagtttttt acaaaatcga aacttcctat tcttgaactt tctcatattt gggagctctc
     1021 agacttcgac aaagatggcg cgttgacact ggatgagttc tgtgctgctt ttcatctggt
     1081 agttgctaga aaaaatggct atgacctacc agagaaactc cccgaaagcc tgatgcccaa
     1141 gctgattgac ttggaagact cagcagatgt gggggaccag ccaggtgagg taggctatcc
     1201 aggctctcct gcagaagcac ctccgagcaa gtcaccgtcg atgccgtcac tgaaccagac
     1261 ttggccagag ctgaatcaga gcagtgagga taccgccatt gtgcatccag ttcccattcg
     1321 tatgactcca agcaaaatcc acatgcagga gatggagctg aaaagaagca gcggtgatca
     1381 tactaacccc accagcccat tacttgtgaa gccatctgat ctttcagaag aaaataaaat
     1441 caattcatca gtaaaatttc cttctggaaa taccgtagca gatgggtaca gtagctcgga
     1501 ctctttccct tccgacccgg agcagattgg gagcaatgga gctcgtcaaa ggtctcattc
     1561 aggagcgtcc ccggataaca ctgcaccacc acctccccct cccaggccac agccttctca
     1621 ttctagatca tcatccttag atatgaatcg gaccttcgca gttgccacag gccaacaaca
     1681 ggctggagtt gttacccacc ctcctgcagt gcctccaaga cctcagccct cacaggcacc
     1741 gggtccctct gtccaccgcc cagtggatgc cgatggtcta ataactcaca ctagtacctc
     1801 acctcagcag ataccagaac aaccaaattt tgcagatttc agccaatttg aagtattcgc
     1861 tgcatcaaat gtctctgaag aacaagacag tgaagccgaa aaacaccctg aggtcttgcc
     1921 ggctgaaaaa gcttctgacc cctcaagctc tcttcgagtt gcccaagcag acagtaaaat
     1981 cgaagaaaag acagccgctg gtgttcctgc caatgtgagc aaaggcacaa cacctctggc
     2041 tccaccacca aaacctgttc ggagaagatt aaagtcagaa gatgagttgc ggccagatgt
     2101 ggatgagcac acacaaaaga caggtgtctt agctgctgtt ctagcgtctc agccgtctat
     2161 ccccagatct gtggggaaag ataagaaggc gatccaggca tcaattagac gcaataagga
     2221 gaccaacacc gttctggcca gactgaacag tgaattgcaa cagcaattaa aggatgtcct
     2281 tgaggagaga atttccctgg aagttcaact ggaacagctc cgaccgttct ctcacctcta
     2341 agtgatggcc gttaactgtg aactcgccca ttctgaagca gtcctgggtt caaagcctct
     2401 ttggaaaccc aaacattcag ctcactgctt aatcgaacat taaattttat gatttgtttt
     2461 accctatatg ttcaccattg tatttaagta tcttttattt tttaatttca ataaaagggt
     2521 caggaggact ttc
//
