LOCUS       XM_039105158            2710 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RALBP1 associated Eps domain
            containing 1 (Reps1), transcript variant X1, mRNA.
ACCESSION   XM_039105158
VERSION     XM_039105158.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105158.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2710
                     /gene="Reps1"
                     /note="RALBP1 associated Eps domain containing 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 20 ESTs, 2 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     43 samples with support for all annotated introns"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
     CDS             32..2518
                     /gene="Reps1"
                     /codon_start=1
                     /product="ralBP1-associated Eps domain-containing protein
                     1 isoform X1"
                     /protein_id="XP_038961086.1"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
                     /translation="MEGLTLSDAEQKYYSDLFSYCDIESTKKVVVNGRVLELFRAAQL
                     PNDVVLQIMELCGATRLGYFGRSQFYIALKLVAVAQSGFPLRVESINTEMSAVKSMDI
                     VWIFHKLFREEILSVLLFLWSTVKDLPLPRFVASKNEQESRHAASYSSDAENQSAYAG
                     VIPPPPGRGQVKKAPGSHDAAQPRPSADQQEPASPVVSPQQSPPTSPHTWRKHNRHPS
                     GGNSERPLAGPGPFWSPFGDAQSGSSAGDAVWSGHSPPPPQENWVSFADTPPTSALLT
                     MHPASVQDQTTVRTVASATTANEIRRQSSSYDDPWKITDEQRQYYVNQFKTIQPDLNG
                     FIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLP
                     EKLPESLMPKLIDLEDSADVGDQPGEVGYPGSPAEAPPSKSPSMPSLNQTWPELNQSS
                     EQWETFSERSSSSQTLTQFDSNIAPADPDTAIVHPVPIRMTPSKIHMQEMELKRSSGD
                     HTNPTSPLLVKPSDLSEENKINSSVKFPSGNTVADGYSSSDSFPSDPEQIGSNGARQR
                     SHSGASPDNTAPPPPPPRPQPSHSRSSSLDMNRTFAVATGQQQAGVVTHPPAVPPRPQ
                     PSQAPGPSVHRPVDADGLITHTSTSPQQIPEQPNFADFSQFEVFAASNVSEEQDSEAE
                     KHPEVLPAEKASDPSSSLRVAQADSKIEEKTAAGVPANVSKGTTPLAPPPKPVRRRLK
                     SEDELRPDVDEHTQKTGVLAAVLASQPSIPRSVGKDKKAIQASIRRNKETNTVLARLN
                     SELQQQLKDVLEERISLEVQLEQLRPFSHL"
ORIGIN      
        1 ggggcggggc ggccgcgggg ccgaggcgaa gatggaaggc ttgacgctga gcgacgccga
       61 gcagaaatac tactcggatc tcttctccta ctgcgacatc gagagcacca agaaggtggt
      121 ggtcaacggg cgagtgctcg agctgttccg ggccgcgcag ctgcccaacg acgtggtcct
      181 ccagatcatg gagctttgcg gtgcaacaag acttggttat tttggaagga gtcagttcta
      241 cattgctttg aagcttgtag ccgttgccca gtctgggttc ccactcagag tggagagtat
      301 aaacactgag atgtcagccg taaagtccat ggacatagtc tggattttcc ataaactctt
      361 cagggaggaa atactgagcg tgttactgtt tttgtggtcg acagtaaagg atctccctct
      421 tccacgattt gttgcttcaa agaatgagca agaatcccgc cacgcagcct cctactcttc
      481 agacgctgaa aaccagagcg cttacgcggg tgtgatcccc cctcctcctg gtaggggcca
      541 ggttaagaag gcacccggaa gccacgatgc ggctcagcct cgtccgtctg cagatcagca
      601 ggaacctgca tctccagtag tttcacccca gcagtcccca ccgacttctc cacacacatg
      661 gaggaagcac aatcgccacc ccagtggggg gaatagtgag aggcctcttg caggaccagg
      721 gccgttctgg tcgccttttg gtgatgcgca atcaggctct tctgctggtg atgcggtgtg
      781 gtctgggcat tccccccctc cacctcaaga aaactgggtc agttttgcag atactccacc
      841 aaccagtgct cttttaacca tgcatcctgc ttctgtccag gaccagacaa cagtacgaac
      901 tgtagcctca gccacaactg ccaatgaaat ccgtaggcaa tccagtagtt acgatgatcc
      961 ctggaaaata acagatgaac aaagacagta ttatgtaaat cagtttaaaa ccattcagcc
     1021 tgatctgaac ggatttattc cagggtctgc agctaaagag ttttttacaa aatcgaaact
     1081 tcctattctt gaactttctc atatttggga gctctcagac ttcgacaaag atggcgcgtt
     1141 gacactggat gagttctgtg ctgcttttca tctggtagtt gctagaaaaa atggctatga
     1201 cctaccagag aaactccccg aaagcctgat gcccaagctg attgacttgg aagactcagc
     1261 agatgtgggg gaccagccag gtgaggtagg ctatccaggc tctcctgcag aagcacctcc
     1321 gagcaagtca ccgtcgatgc cgtcactgaa ccagacttgg ccagagctga atcagagcag
     1381 tgagcagtgg gagacattta gtgaacgctc ttcaagctca caaactctga cccaatttga
     1441 ttctaacatt gcaccagctg atcctgatac cgccattgtg catccagttc ccattcgtat
     1501 gactccaagc aaaatccaca tgcaggagat ggagctgaaa agaagcagcg gtgatcatac
     1561 taaccccacc agcccattac ttgtgaagcc atctgatctt tcagaagaaa ataaaatcaa
     1621 ttcatcagta aaatttcctt ctggaaatac cgtagcagat gggtacagta gctcggactc
     1681 tttcccttcc gacccggagc agattgggag caatggagct cgtcaaaggt ctcattcagg
     1741 agcgtccccg gataacactg caccaccacc tccccctccc aggccacagc cttctcattc
     1801 tagatcatca tccttagata tgaatcggac cttcgcagtt gccacaggcc aacaacaggc
     1861 tggagttgtt acccaccctc ctgcagtgcc tccaagacct cagccctcac aggcaccggg
     1921 tccctctgtc caccgcccag tggatgccga tggtctaata actcacacta gtacctcacc
     1981 tcagcagata ccagaacaac caaattttgc agatttcagc caatttgaag tattcgctgc
     2041 atcaaatgtc tctgaagaac aagacagtga agccgaaaaa caccctgagg tcttgccggc
     2101 tgaaaaagct tctgacccct caagctctct tcgagttgcc caagcagaca gtaaaatcga
     2161 agaaaagaca gccgctggtg ttcctgccaa tgtgagcaaa ggcacaacac ctctggctcc
     2221 accaccaaaa cctgttcgga gaagattaaa gtcagaagat gagttgcggc cagatgtgga
     2281 tgagcacaca caaaagacag gtgtcttagc tgctgttcta gcgtctcagc cgtctatccc
     2341 cagatctgtg gggaaagata agaaggcgat ccaggcatca attagacgca ataaggagac
     2401 caacaccgtt ctggccagac tgaacagtga attgcaacag caattaaagg atgtccttga
     2461 ggagagaatt tccctggaag ttcaactgga acagctccga ccgttctctc acctctaagt
     2521 gatggccgtt aactgtgaac tcgcccattc tgaagcagtc ctgggttcaa agcctctttg
     2581 gaaacccaaa cattcagctc actgcttaat cgaacattaa attttatgat ttgttttacc
     2641 ctatatgttc accattgtat ttaagtatct tttatttttt aatttcaata aaagggtcag
     2701 gaggactttc
//
