LOCUS       NM_001415798            2985 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RALBP1 associated Eps domain containing 1
            (Reps1), transcript variant 3, mRNA.
ACCESSION   NM_001415798 XM_039105189
VERSION     NM_001415798.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Dergai,O., Novokhatska,O., Dergai,M., Skrypkina,I., Tsyba,L.,
            Moreau,J. and Rynditch,A.
  TITLE     Intersectin 1 forms complexes with SGIP1 and Reps1 in
            clathrin-coated pits
  JOURNAL   Biochem Biophys Res Commun 402 (2), 408-413 (2010)
   PUBMED   20946875
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Dec 30, 2022 this sequence version replaced XM_039105189.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.163.1, SRR26643292.108.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-549               JAXUCZ010000001.1  14517589-14518137
            550-673             JAXUCZ010000001.1  14558209-14558332
            674-870             JAXUCZ010000001.1  14561410-14561606
            871-1024            JAXUCZ010000001.1  14561709-14561862
            1025-1149           JAXUCZ010000001.1  14562325-14562449
            1150-1312           JAXUCZ010000001.1  14562950-14563112
            1313-1376           JAXUCZ010000001.1  14563373-14563436
            1377-1531           JAXUCZ010000001.1  14564480-14564634
            1532-1653           JAXUCZ010000001.1  14572822-14572943
            1654-1734           JAXUCZ010000001.1  14576208-14576288
            1735-1822           JAXUCZ010000001.1  14583173-14583260
            1823-1924           JAXUCZ010000001.1  14584247-14584348
            1925-1997           JAXUCZ010000001.1  14585897-14585969
            1998-2116           JAXUCZ010000001.1  14589048-14589166
            2117-2181           JAXUCZ010000001.1  14590184-14590248
            2182-2367           JAXUCZ010000001.1  14591382-14591567
            2368-2463           JAXUCZ010000001.1  14592569-14592664
            2464-2612           JAXUCZ010000001.1  14593011-14593159
            2613-2718           JAXUCZ010000001.1  14593869-14593974
            2719-2985           JAXUCZ010000001.1  14595138-14595404
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p12"
     gene            1..2985
                     /gene="Reps1"
                     /note="RALBP1 associated Eps domain containing 1"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
     exon            1..549
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     CDS             397..2787
                     /gene="Reps1"
                     /note="isoform 3 is encoded by transcript variant 3;
                     ralBP1-associated Eps domain-containing protein 1; RalBP1
                     associated Eps domain containing protein;
                     ralBP1-associated Eps domain-containing protein 1-like"
                     /codon_start=1
                     /product="ralBP1-associated Eps domain-containing protein
                     1 isoform 3"
                     /protein_id="NP_001402727.1"
                     /db_xref="GeneID:292944"
                     /db_xref="RGD:1307131"
                     /translation="MEGLTLSDAEQKYYSDLFSYCDIESTKKVVVNGRVLELFRAAQL
                     PNDVVLQIMELCGATRLGYFGRSQFYIALKLVAVAQSGFPLRVESINTVKDLPLPRFV
                     ASKNEQESRHAASYSSDAENQSAYAGVIPPPPGRGQVKKAPGSHDAAQPRPSADQQEP
                     ASPVVSPQQSPPTSPHTWRKHNRHPSGGNSERPLAGPGPFWSPFGDAQSGSSAGDAVW
                     SGHSPPPPQENWVSFADTPPTSALLTMHPASVQDQTTVRTVASATTANEIRRQSSSYD
                     DPWKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDK
                     DGALTLDEFCAAFHLVVARKNGYDLPEKLPESLMPKLIDLEDSADVGDQPGEVGYPGS
                     PAEAPPSKSPSMPSLNQTWPELNQSSEQWETFSERSSSSQTLTQFDSNIAPADPDTAI
                     VHPVPIRMTPSKIHMQEMELKRSSGDHTNPTSPLLVKPSDLSEENKINSSVKFPSGNT
                     VADGYSSSDSFPSDPEQIGSNGARQRSHSGASPDNTAPPPPPPRPQPSHSRSSSLDMN
                     RTFAVATGQQQAGVVTHPPAVPPRPQPSQAPGPSVHRPVDADGLITHTSTSPQQIPEQ
                     PNFADFSQFEVFAASNVSEEQDSEAEKHPEVLPAEKASDPSSSLRVAQADSKIEEKTA
                     AGVPANVSKGTTPLAPPPKPVRRRLKSEDELRPDVDEHTQKTGVLAAVLASQPSIPRS
                     VGKDKKAIQASIRRNKETNTVLARLNSELQQQLKDVLEERISLEVQLEQLRPFSHL"
     exon            550..673
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            674..870
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            871..1024
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1149
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1312
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1376
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..1531
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1653
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1734
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1735..1822
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..1924
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1925..1997
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            1998..2116
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..2181
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2182..2367
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2368..2463
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2464..2612
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2613..2718
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
     exon            2719..2985
                     /gene="Reps1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acatccgggt ctggagcgcg gccgccgctg tcagtgccgg gccggggcgc agtcaatggc
       61 ggctgaagga ggcggagcgg cggccacgcg cagccccgag cccccgaaac tttagacttc
      121 cgaagcccca caacttctcg gaggggggtg cgtgggcgga aggggaagcc gaggcgggaa
      181 gcccgaggga cgcggccgag ccccgagccg ccgcctcctt ccccacgccg agctttgcgg
      241 ccgcgcgccg ccgccgccgg ctgccccggg ccacacgagc tcgcggcccc gcggggaggc
      301 cgtgctgcac gcagtccccc gccggccgcc ccgggtcgcg gggccggcgc ccgggtggtg
      361 catgcggggc ggggcggccg cggggccgag gcgaagatgg aaggcttgac gctgagcgac
      421 gccgagcaga aatactactc ggatctcttc tcctactgcg acatcgagag caccaagaag
      481 gtggtggtca acgggcgagt gctcgagctg ttccgggccg cgcagctgcc caacgacgtg
      541 gtcctccaga tcatggagct ttgcggtgca acaagacttg gttattttgg aaggagtcag
      601 ttctacattg ctttgaagct tgtagccgtt gcccagtctg ggttcccact cagagtggag
      661 agtataaaca ctgtaaagga tctccctctt ccacgatttg ttgcttcaaa gaatgagcaa
      721 gaatcccgcc acgcagcctc ctactcttca gacgctgaaa accagagcgc ttacgcgggt
      781 gtgatccccc ctcctcctgg taggggccag gttaagaagg cacccggaag ccacgatgcg
      841 gctcagcctc gtccgtctgc agatcagcag gaacctgcat ctccagtagt ttcaccccag
      901 cagtccccac cgacttctcc acacacatgg aggaagcaca atcgccaccc cagtgggggg
      961 aatagtgaga ggcctcttgc aggaccaggg ccgttctggt cgccttttgg tgatgcgcaa
     1021 tcaggctctt ctgctggtga tgcggtgtgg tctgggcatt ccccccctcc acctcaagaa
     1081 aactgggtca gttttgcaga tactccacca accagtgctc ttttaaccat gcatcctgct
     1141 tctgtccagg accagacaac agtacgaact gtagcctcag ccacaactgc caatgaaatc
     1201 cgtaggcaat ccagtagtta cgatgatccc tggaaaataa cagatgaaca aagacagtat
     1261 tatgtaaatc agtttaaaac cattcagcct gatctgaacg gatttattcc agggtctgca
     1321 gctaaagagt tttttacaaa atcgaaactt cctattcttg aactttctca tatttgggag
     1381 ctctcagact tcgacaaaga tggcgcgttg acactggatg agttctgtgc tgcttttcat
     1441 ctggtagttg ctagaaaaaa tggctatgac ctaccagaga aactccccga aagcctgatg
     1501 cccaagctga ttgacttgga agactcagca gatgtggggg accagccagg tgaggtaggc
     1561 tatccaggct ctcctgcaga agcacctccg agcaagtcac cgtcgatgcc gtcactgaac
     1621 cagacttggc cagagctgaa tcagagcagt gagcagtggg agacatttag tgaacgctct
     1681 tcaagctcac aaactctgac ccaatttgat tctaacattg caccagctga tcctgatacc
     1741 gccattgtgc atccagttcc cattcgtatg actccaagca aaatccacat gcaggagatg
     1801 gagctgaaaa gaagcagcgg tgatcatact aaccccacca gcccattact tgtgaagcca
     1861 tctgatcttt cagaagaaaa taaaatcaat tcatcagtaa aatttccttc tggaaatacc
     1921 gtagcagatg ggtacagtag ctcggactct ttcccttccg acccggagca gattgggagc
     1981 aatggagctc gtcaaaggtc tcattcagga gcgtccccgg ataacactgc accaccacct
     2041 ccccctccca ggccacagcc ttctcattct agatcatcat ccttagatat gaatcggacc
     2101 ttcgcagttg ccacaggcca acaacaggct ggagttgtta cccaccctcc tgcagtgcct
     2161 ccaagacctc agccctcaca ggcaccgggt ccctctgtcc accgcccagt ggatgccgat
     2221 ggtctaataa ctcacactag tacctcacct cagcagatac cagaacaacc aaattttgca
     2281 gatttcagcc aatttgaagt attcgctgca tcaaatgtct ctgaagaaca agacagtgaa
     2341 gccgaaaaac accctgaggt cttgccggct gaaaaagctt ctgacccctc aagctctctt
     2401 cgagttgccc aagcagacag taaaatcgaa gaaaagacag ccgctggtgt tcctgccaat
     2461 gtgagcaaag gcacaacacc tctggctcca ccaccaaaac ctgttcggag aagattaaag
     2521 tcagaagatg agttgcggcc agatgtggat gagcacacac aaaagacagg tgtcttagct
     2581 gctgttctag cgtctcagcc gtctatcccc agatctgtgg ggaaagataa gaaggcgatc
     2641 caggcatcaa ttagacgcaa taaggagacc aacaccgttc tggccagact gaacagtgaa
     2701 ttgcaacagc aattaaagga tgtccttgag gagagaattt ccctggaagt tcaactggaa
     2761 cagctccgac cgttctctca cctctaagtg atggccgtta actgtgaact cgcccattct
     2821 gaagcagtcc tgggttcaaa gcctctttgg aaacccaaac attcagctca ctgcttaatc
     2881 gaacattaaa ttttatgatt tgttttaccc tatatgttca ccattgtatt taagtatctt
     2941 ttatttttta atttcaataa aagggtcagg aggactttct ctgga
//
