LOCUS       XM_017590003            2201 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RELB proto-oncogene, NF-kB subunit
            (Relb), transcript variant X3, mRNA.
ACCESSION   XM_017590003
VERSION     XM_017590003.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017590003.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2201
                     /gene="Relb"
                     /note="RELB proto-oncogene, NF-kB subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     83 samples with support for all annotated introns"
                     /db_xref="GeneID:100360982"
                     /db_xref="RGD:2321078"
     CDS             213..1868
                     /gene="Relb"
                     /codon_start=1
                     /product="transcription factor RelB isoform X3"
                     /protein_id="XP_017445492.1"
                     /db_xref="GeneID:100360982"
                     /db_xref="RGD:2321078"
                     /translation="MPSRRAARESAPELGALGSSDIPSLSRTTEIIDEYIKENGFGLD
                     GAQLSEMPRLVPRGPASLSSVTLGPAAPPPPATPPWNCTLGRLVSPGPCPRPYLVITE
                     QPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEVTACLVWKDW
                     PHRVHPHSLVGKDCTDGVCRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAIERKIQLGI
                     DPYNAGSLKNHQEVDMNVVRICFQASYRDQQGHLHRMDPILSEPVYDKKSTNTSELRI
                     CRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWEGRADFSQADVHRQIAIVFKT
                     PPYEDLEISEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKRGLPDVLGE
                     LSSSDPHGIESKRRKKKPVFLDHFLPGHSSGLFLPPSALQSADTDFFPGTISLPGLEP
                     PGGPDLLDDGFAYDPSAPTLFTMLDLLPPAPPLASAVVGNGGAGATVVESPGPEPLSL
                     DSFAAPGPGDVGTASLVGSNMFPNQYREAAFGGGLLSPGPEAT"
ORIGIN      
        1 cgccgccccg cccccgcccg ccgcccgctc ggcccggcgc cccccgcagc cccgggcgcc
       61 gtgcgtccaa cccggccttc ggccctatcc ttgcgcggct tccccggccg gtgatcgtcc
      121 caacagactg ggctgtccgg ctgcccggct tgccctcgtg cgcgcttcgc cctgagcttg
      181 cctttgggct gtcggtccct acgggccggg ccatgccgag tcgccgcgct gccagagagt
      241 ccgcgcccga gctaggggcc ttgggttcca gtgacatccc ttcgctgtcc aggaccacag
      301 aaatcatcga cgaatatatt aaggagaacg gcttcggcct ggacggggca cagctgagtg
      361 agatgcctcg tctggtgccc cgcgggccgg cctcactgag cagcgtcact ctgggcccag
      421 ctgcaccacc gcctcctgcc acgccgccct ggaactgcac actgggcagg ctggtatcac
      481 ccggcccatg cccacggcca tacttggtca tcacagagca gccaaagcag cgtggcatgc
      541 gcttccgcta cgagtgcgag ggtcgctcgg ctggcagcat cctcggggag agcagcactg
      601 aagccagcaa gactctgccc gccatcgagc ttcgagactg tggcgggctg cgggaggtgg
      661 aggtgacggc gtgcctggtg tggaaggact ggccacaccg ggtacaccca cacagccttg
      721 tggggaaaga ctgcacggac ggcgtctgca gggtgcggct gcggcctcac gtcagccccc
      781 ggcacagctt taacaacttg ggcatccagt gtgttaggaa gaaggaaatc gaagctgcca
      841 ttgagcgtaa gatccagctg ggaattgacc cctacaatgc tggctccctg aagaaccatc
      901 aggaggtcga catgaatgtt gtcaggatct gcttccaggc ctcctatcgc gaccagcagg
      961 gacatttgca ccgcatggac cccattctct ctgagcctgt ctacgacaag aagtccacca
     1021 acacctctga gctgcggatt tgccgaatca acaaggagag cgggccatgc acaggtggtg
     1081 aggagctgta cttgctatgt gacaaggtgc aaaaagagga catatccgtg gtgttcagca
     1141 cagcttcctg ggaaggtcgt gctgactttt ctcaagctga cgtgcacagg cagatcgcca
     1201 ttgtgttcaa aacgccacca tacgaggacc tggagatctc agagcccgtg acggtcaacg
     1261 tgttcttgca gcggctcaca gacggggtct gcagcgagcc gctgcccttc acgtacttgc
     1321 ctcgggacca tgacagctat ggtgtggaca agaagcgaaa gcggggactg cctgatgtcc
     1381 ttggagagct gagcagctct gatccacatg gaattgaaag caagcgacgg aaaaagaaac
     1441 cagtgttctt ggaccacttc ctgcctggcc acagctccgg cttgttcctg ccgccatcgg
     1501 ctctgcagtc agcagacact gatttcttcc ctggtaccat atcccttcct gggttggagc
     1561 ctcctggcgg ccctgacctc ctggatgatg gctttgccta cgatccctct gccccaacgc
     1621 tcttcactat gttggacctg ctgcccccag caccaccact tgccagtgct gtggtgggta
     1681 atgggggtgc aggggccacg gtcgtggagt ctcctggccc agagcccctg tcgctggact
     1741 cttttgcagc tccgggccct ggggatgttg gtactgctag ccttgtgggc agcaacatgt
     1801 tccctaacca gtaccgagag gcagccttcg ggggtggcct cctgtcccca gggcctgaag
     1861 ccacgtagcc tctgagttga ccaggaggca gtgggtgagg cttgtggtcc agcactccat
     1921 ccccgaagcc aaccttgatc agtcttccag cttcctcatc ctgagtcgga cgtctgcagt
     1981 gctgttgaga tggggtgagc gcctgttctc tttgagccca ttaaacagaa tgcggagtcc
     2041 ggagaggaaa aggggctcct gcaggtggac cccttctcag gacagaatct caagattgta
     2101 cataggggat agggagcaga tccccagtct tcttccccaa tcctgaagaa gggggtaggt
     2161 tgtttgttca gttttcccaa taaaaattag ttttttgagc c
//
