LOCUS       XM_008759054            2251 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RELB proto-oncogene, NF-kB subunit
            (Relb), transcript variant X6, mRNA.
ACCESSION   XM_008759054
VERSION     XM_008759054.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008759054.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2251
                     /gene="Relb"
                     /note="RELB proto-oncogene, NF-kB subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 133 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100360982"
                     /db_xref="RGD:2321078"
     CDS             239..1918
                     /gene="Relb"
                     /codon_start=1
                     /product="transcription factor RelB isoform X5"
                     /protein_id="XP_008757276.1"
                     /db_xref="GeneID:100360982"
                     /db_xref="RGD:2321078"
                     /translation="MPSRRAARESAPELGALGLRLPGSSDIPSLSRTTDELEIIDEYI
                     KENGFGLDGAQLSEMPRLVPRGPASLSSVTLGPAAPPPPATPPWNCTLGRLVSPGPCP
                     RPYLVITEQPKQRGMRFRYECEGRSAGSILGESSTEASKTLPAIELRDCGGLREVEVT
                     ACLVWKDWPHRVHPHSLVGKDCTDGVCRVRLRPHVSPRHSFNNLGIQCVRKKEIEAAI
                     ERKIQLGIDPYNAGSLKNHQEVDMNVVRICFQASYRDQQGHLHRMDPILSEPVYDKKS
                     TNTSELRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWEGRADFSQADVHR
                     QIAIVFKTPPYEDLEISEPVTVNVFLQRLTDGVCSEPLPFTYLPRDHDSYGVDKKRKR
                     GLPDVLGELSSSDPHGIESKRRKKKPVFLDHFLPGHSSGLFLPPSALQSADTDFFPGT
                     ISLPGLEPPGGPDLLDDGFAYDPSAPTLFTMLDLLPPAPPLASAVVGNGGAGATVVES
                     PGPEPLSLDSFAAPGPGDVGTASLVGSNMFPNQYREAAFGGGLLSPGPEAT"
ORIGIN      
        1 cgcaggccgg cggcgccggg gaattccgcc gccccgcccc cgcccgccgc ccgctcggcc
       61 cggcgccccc cgcagccccg ggcgccgtgc gtccaacccg gccttcggcc ctatccttgc
      121 gcggcttccc cggccggtga tcgtcccaac agactgggct gtccggctgc ccggcttgcc
      181 ctcgtgcgcg cttcgccctg agcttgcctt tgggctgtcg gtccctacgg gccgggccat
      241 gccgagtcgc cgcgctgcca gagagtccgc gcccgagcta ggggccttgg gtctccgtct
      301 cccaggttcc agtgacatcc cttcgctgtc caggaccaca gatgaactgg aaatcatcga
      361 cgaatatatt aaggagaacg gcttcggcct ggacggggca cagctgagtg agatgcctcg
      421 tctggtgccc cgcgggccgg cctcactgag cagcgtcact ctgggcccag ctgcaccacc
      481 gcctcctgcc acgccgccct ggaactgcac actgggcagg ctggtatcac ccggcccatg
      541 cccacggcca tacttggtca tcacagagca gccaaagcag cgtggcatgc gcttccgcta
      601 cgagtgcgag ggtcgctcgg ctggcagcat cctcggggag agcagcactg aagccagcaa
      661 gactctgccc gccatcgagc ttcgagactg tggcgggctg cgggaggtgg aggtgacggc
      721 gtgcctggtg tggaaggact ggccacaccg ggtacaccca cacagccttg tggggaaaga
      781 ctgcacggac ggcgtctgca gggtgcggct gcggcctcac gtcagccccc ggcacagctt
      841 taacaacttg ggcatccagt gtgttaggaa gaaggaaatc gaagctgcca ttgagcgtaa
      901 gatccagctg ggaattgacc cctacaatgc tggctccctg aagaaccatc aggaggtcga
      961 catgaatgtt gtcaggatct gcttccaggc ctcctatcgc gaccagcagg gacatttgca
     1021 ccgcatggac cccattctct ctgagcctgt ctacgacaag aagtccacca acacctctga
     1081 gctgcggatt tgccgaatca acaaggagag cgggccatgc acaggtggtg aggagctgta
     1141 cttgctatgt gacaaggtgc aaaaagagga catatccgtg gtgttcagca cagcttcctg
     1201 ggaaggtcgt gctgactttt ctcaagctga cgtgcacagg cagatcgcca ttgtgttcaa
     1261 aacgccacca tacgaggacc tggagatctc agagcccgtg acggtcaacg tgttcttgca
     1321 gcggctcaca gacggggtct gcagcgagcc gctgcccttc acgtacttgc ctcgggacca
     1381 tgacagctat ggtgtggaca agaagcgaaa gcggggactg cctgatgtcc ttggagagct
     1441 gagcagctct gatccacatg gaattgaaag caagcgacgg aaaaagaaac cagtgttctt
     1501 ggaccacttc ctgcctggcc acagctccgg cttgttcctg ccgccatcgg ctctgcagtc
     1561 agcagacact gatttcttcc ctggtaccat atcccttcct gggttggagc ctcctggcgg
     1621 ccctgacctc ctggatgatg gctttgccta cgatccctct gccccaacgc tcttcactat
     1681 gttggacctg ctgcccccag caccaccact tgccagtgct gtggtgggta atgggggtgc
     1741 aggggccacg gtcgtggagt ctcctggccc agagcccctg tcgctggact cttttgcagc
     1801 tccgggccct ggggatgttg gtactgctag ccttgtgggc agcaacatgt tccctaacca
     1861 gtaccgagag gcagccttcg ggggtggcct cctgtcccca gggcctgaag ccacgtagcc
     1921 tctgagttga ccaggaggca gtgggtgagg cttgtggtcc agcactccat ccccgaagcc
     1981 aaccttgatc agtcttccag cttcctcatc ctgagtcgga cgtctgcagt gctgttgaga
     2041 tggggtgagc gcctgttctc tttgagccca ttaaacagaa tgcggagtcc ggagaggaaa
     2101 aggggctcct gcaggtggac cccttctcag gacagaatct caagattgta cataggggat
     2161 agggagcaga tccccagtct tcttccccaa tcctgaagaa gggggtaggt tgtttgttca
     2221 gttttcccaa taaaaattag ttttttgagc c
//
