LOCUS       XM_039107813            3861 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus receptor accessory protein 1 (Reep1),
            transcript variant X9, mRNA.
ACCESSION   XM_039107813
VERSION     XM_039107813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107813.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3861
                     /gene="Reep1"
                     /gene_synonym="RGD1305230"
                     /note="receptor accessory protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 34
                     ESTs, 19 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 22 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362384"
                     /db_xref="RGD:1305230"
     CDS             288..920
                     /gene="Reep1"
                     /gene_synonym="RGD1305230"
                     /codon_start=1
                     /product="receptor expression-enhancing protein 1 isoform
                     X8"
                     /protein_id="XP_038963741.1"
                     /db_xref="GeneID:362384"
                     /db_xref="RGD:1305230"
                     /translation="MVLLPHPSKYKEYRYGSPYRLIFGTLYPAYYSYKAVKSKDIKEY
                     VKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVH
                     PTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSF
                     SMQDLTTIRGDGAPAPSGPPPPGSGRSSGKHGQPKMSRSASESAGSSGTA"
ORIGIN      
        1 ggcccgcgga gccccggggg gctggggcag cgggcggaac gagccgcggc tgcgccgacg
       61 cgcgagcgcg gggccgggcc gggcgggtgc gctcagtctg gcggcggcgg tgcgcggaca
      121 gacagacgtg tcgggagcgc agcaccgccc gcagcccagc aatccgggcc gcgcccgcca
      181 gccagcccgc ccgccatggt gtcgtggatc atctccaggc tggtggtgca gggacccaca
      241 ctgtaggcct gggtagcctg gaactcacag cagaccagtc tcaactcatg gttctcttgc
      301 ctcatccttc caagtacaaa gaatatagat acgggtcacc atataggctc atatttggca
      361 ccctttatcc tgcatattat tcatacaagg ctgtgaagtc taaggacatt aaagaatatg
      421 tcaaatggat gatgtactgg atcatatttg ccctcttcac cacagcagag acgttcacag
      481 acatcttcct ttgctggttt ccattctatt atgaactaaa aatagcattt gtagcctggc
      541 tgctgtctcc ctatacaaaa ggatccagcc tcctgtacag gaagtttgtt catcccacac
      601 tgtcctcaaa agaaaaggaa atcgatgact gcctggtcca agcaaaagat cgaagttatg
      661 atgccctcgt gcactttggg aagcgaggct tgaatgtggc ggccaccgca gctgtgatgg
      721 ctgcctccaa gggacagggt gccttgtcag aaagactacg gagcttcagc atgcaggacc
      781 tcaccaccat caggggcgat ggtgctcctg ctccctcagg cccccctcca ccagggtctg
      841 ggaggtccag cggcaaacac ggccagccca agatgtccag gagtgcttct gagagtgccg
      901 gcagctcagg caccgcctag aacccttcgg tcccgcttca ggaagaaaag tacctcatcc
      961 tcggccactg aaaccacgtg agatgagcca acagcaccgg atccacagat gtctctcctc
     1021 tgccttaaag agctagtcac tagtaactcg gaagtccgca ggctgggtgt gctttgagtg
     1081 tgcagcccca cagacacggc ctttacttgc tccccccccc ttctgccttt aagaatttct
     1141 gttctctttc ctttttgttc ctgctgggga gaggctaaag ggaaaggtgg tggaggaggg
     1201 tgaactttat gtcttctggg gttagtgatt ttccacagtt ggattgtctt gtggccacag
     1261 tgtttttaga tatataagca ctctttccat gatgctgctg agatgtacat ttgtaagtta
     1321 tttgttgcat agtttctagt cctgtaaatg caaacgaagt gatctttttt aaaactcctt
     1381 tggttgttct tggtactaat acattggact atggtgtaca tatttgctgc ttttggctta
     1441 atgttatgaa ctcgcaaggg ctgccagaag ttctggtaag tgagagagct gcaaaaacaa
     1501 aaatgtagac taatctttcg attctaggca acgtctccaa cctgcttaca aagccagtgc
     1561 cagtagggca tcacttctgc aggaaggtgg ccatgtgctt ccttcccatg gctgtgtggt
     1621 tggtagggca gagctgaggc aggagtgcag tgtttcagca acagggaagg ttggtgggca
     1681 tcagggagag gaaggaacag aacggcttct tcagatctgg aggtctgggt gtcctaacag
     1741 gtttgttgtg ctgtgtacct aatggcaccc ttcctgcctt ttggcttctg agcccttcca
     1801 ggagtactgc ttcaggcagg caggcaggca ggctcgccct tacttagcat ggatgtttgc
     1861 aggatggagt ctcagctgct ggcagaattg caagtatctc agaagcactt ggcaagagtg
     1921 tttctccttc agggaccagt gctgtggctg atttctccag aacgagcctg tatctgagca
     1981 ccttgtttta gagtacacta agcaagagaa aagcctagaa ctaggttttt gttacagatg
     2041 tgtacagatg tgctcaaaaa acatgagacc ctcaaatctc aaatgaccac caaaaggcag
     2101 ggtctagggg gaactgaggc taagccacag gcagctgtgg ctcttgctcc ctgctggctt
     2161 gtgtggaaga tgaacgggat ggacggacac tcatgtcact ccatgtcttc atggatttta
     2221 tacaagccag gactacactg agaattttga caagtctctg acttagataa cattgtgttc
     2281 tgagggagct gccctcttct ctgatagctg agccaaactg tagggctaat ctatgtgcgt
     2341 agagttggtg tttcctttct gtgtaatgca tgcagaggtc acaacctctt tggattatgt
     2401 ttgttcaccg ctatgccctg aaggctagag aaatcgcgtt gtgtaccaca tagaactgtc
     2461 aactgattgc aaacaggctc aatgacaaac cgctctggta ctgagctatg caaacatgca
     2521 ttgagagact gctacattag ctggggcttg gccatttcac aaagcgtttc agttggagtt
     2581 cattgctacc agatacacct agtggatttt ccaaagatga ttttgtattt tagaacccac
     2641 cctcgggaac taacccaaga gctgatgact gaggacaaat agtctgcctg tgccccatac
     2701 ccatctgaac ccattaggaa aagcatctgc cctcttcaag ctcacccaac agctcctcac
     2761 aagagaaatg ataccctcta aaatgtacaa ccatgtcagt taggtgtatc caggatgaat
     2821 ccagagacac aggtgcagaa aagactgaga gaagaagctt tgaacctccc ccccccgccc
     2881 cccagaatac taactggctc tagggccaga gtttaagtcc tagtacattt tcaccgtttt
     2941 acaacaggaa gtcataacca tctaggctcc aaggttgtac tcagccatgc caaaacccag
     3001 tcggaagcac tcctctcaga tatgctgtat tacttcttgc tcaagattta aaatataaag
     3061 gtatctaaat tgtcgtctca ttgtaagtgt aactattttt ccttcaagtg gtgactaaga
     3121 agttgactaa gtttcttctc ttaatgacac tcactgtaca gccaaacaca gctgtcttat
     3181 ttcttaagaa ctgtgtttat ttttccaaca agctgtgtgt ttgtatgtag actgacatga
     3241 tgtgaatgcc cctgtacatg tagaggtgtg gtgctctgtc tacacaagat aaatgaatgt
     3301 ttctagtttg ctgacttaag acacgggctg ttgacaaatt gctagcttga aggtctactt
     3361 gtctcggctt tgagttacag tccatggagc acatgcccca tttctgaaga ggtgcggttt
     3421 cacgctcatc aactggagat ttagtcagaa tgcctcctgg ctttgtgtga atagcttgct
     3481 cactttgctg gcctttgata tatgtattct ctgtggtaaa ctgtccgtgt gtttgtatta
     3541 agagtgcttg tcaatcacaa ccatcacata gccatcccgg ttcttcatct tgcacagtat
     3601 ttgaagtatt acaagtggtg gaagatgtgc ttcatcctcc gacagtgcac gctgggagag
     3661 ctgatgttgc ggatcgtgac tgcgcatttc ctccagctta tttctgaggt ctctctagga
     3721 tggaaataat taatagtaca ctggactgcg tgtctaaggg atgtaaagtg cagtgttccg
     3781 gaggctgaag ctctgctgtt ttgttataat gcctgataaa catcttgaat aaagtcttaa
     3841 catttttctt ttaaaaaaaa a
//
