LOCUS       XM_039098332            4356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus reeler domain containing 1 (Reeld1),
            mRNA.
ACCESSION   XM_039098332
VERSION     XM_039098332.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 21% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-566               JACYVU010000313.1  6187268-6187833
            567-789             JACYVU010000313.1  6190444-6190666
            790-1107            JACYVU010000313.1  6192684-6193001
            1108-1246           JACYVU010000313.1  6194832-6194970
            1247-1380           JACYVU010000313.1  6201046-6201179
            1381-1676           JACYVU010000313.1  6201414-6201709
            1677-1816           JACYVU010000313.1  6202659-6202798
            1817-4356           JACYVU010000313.1  6202801-6205340
FEATURES             Location/Qualifiers
     source          1..4356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4356
                     /gene="Reeld1"
                     /note="reeler domain containing 1; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 81% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120098656"
                     /db_xref="RGD:41160673"
     CDS             365..2020
                     /gene="Reeld1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1817..1819,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: reelin domain-containing
                     protein 1"
                     /protein_id="XP_038954260.1"
                     /db_xref="GeneID:120098656"
                     /db_xref="RGD:41160673"
                     /translation="MRILAALSSWTCATLTLASCSATFPPGARTQACEDMWPRHTQTL
                     PNHPGPHYIHTSRSSCLPGTKIPASVQSSRDSVGFLLQARSSGCHQTAGTFVLTPGHS
                     KLMTCLEEADTVTHSDSTLKRTLLFIRKAPAQPVEDIRFPSVHLDSRSSVSNLLSPGI
                     GVVQGIAYQKLSLSPWFCFCGPPITKSYIMLWVRSESPLVPRQTHSVSATLYHMQPGS
                     PAQAPYWRPDAARELAQLRLAGCSHAWFPAHPESETLKATPHLGVELPPPWMLPHILG
                     DVYSAVSDASLGSQQGDIQCQKLSREINPILQPSLDVCKLETLMTLRKGSPDSVVSIP
                     STHHRCKVSIYTFVLRIKRMAVLMCSLLSHTPPPTLLSGICVQTQDFFPGKSDLSKHI
                     EAREKIDFHFKVSMSPFTLLIPFPTFRTQNGLSFDSLKTCLSLDKDTAQETHCGTGTA
                     DGGVGNLSKTDLRLEVKLEGASASLVMQLRTDQLXLVISWESCLICLSATLGMALAAG
                     LCHLYPQSYHKRTERVLQMLLTADAVARSGSAEAVHDRRTGDN"
ORIGIN      
        1 agtaaaaata aatcattaac aaaaataaac acagctttgt gcagtggcag tattgtagcc
       61 aatgaggttt atctgaggtg cgattattgc taattgaaaa cttttcccaa taccccgcca
      121 tgacaacttg caatatagtt ggcattggca atttttgaca gtctctatgg aaactgaatt
      181 aaaaaaaata aacactttcc ataaccagac ttgtattttt gacaccgacc ttgggaccag
      241 cactaaaatt atcgcagagg caaagggagc ctaggattca ggccagcatg tctgaagatc
      301 tcactgcatc ttcttcggga caggaactgt ggccaatgtt tgtcaggtct caagaaagcc
      361 caggatgaga attctagctg ccctttcaag ctggacttgt gccaccctga ctctagcttc
      421 ctgctcagct acctttcccc ctggtgccag gacccaggcc tgtgaagata tgtggcctag
      481 gcacacacaa accctgccca accaccctgg tccccactac atccatacta gcaggtcttc
      541 ctgcttgcca ggaactaaga ttccagcgtc tgtccaaagc agtcgtgact ccgtgggctt
      601 tctgctgcag gcacgcagca gtggctgtca ccagacagcg ggcacctttg tcttgactcc
      661 tggccattct aaactgatga cttgtttaga agaggcagat actgtcactc actctgacag
      721 caccctgaag aggacacttt tgttcataag gaaagcccct gcccagcctg tggaggatat
      781 tagattccct tctgtgcacc tagactcccg ttcttcagtg tctaatctgc tctcccctgg
      841 tattggggta gtccagggaa ttgcctacca gaaactcagt ctgagtccct ggttttgttt
      901 ctgtggtcca ccaatcacca agtcatatat catgctgtgg gtcaggagtg aatcaccctt
      961 agtgcctcga cagacacaca gtgtctctgc caccctctac cacatgcaac ctgggtcacc
     1021 agcgcaagca ccttactgga ggccagatgc tgccagagaa ctggcccagc tacggcttgc
     1081 tggttgctca catgcctggt tcccagcaca ccctgagagc gagactttaa aggcaacacc
     1141 acacttaggt gtggagctcc cacccccttg gatgctgcct cacatactgg gagatgtata
     1201 ctctgctgtg tcagatgcca gcctgggtag ccaacagggt gacatacaat gccagaaact
     1261 cagtagagag atcaacccaa tcttacaacc atccctggat gtctgtaagt tggagacact
     1321 tatgactctc agaaaaggct ccccagacag tgttgtttcc atccccagca cccaccatag
     1381 atgtaaagtg tcaatatata cttttgtatt acgtattaaa cgaatggcag tactcatgtg
     1441 ttctttgctt tctcacaccc ctcccccaac tctcctttct ggcatctgtg tccaaactca
     1501 ggattttttt ccaggaaaat ctgatttatc aaaacacata gaggcaagag aaaagataga
     1561 ttttcatttt aaagtctcta tgtctccttt caccctttta attcccttcc ccacctttag
     1621 gactcagaat ggtctgagct ttgattcttt gaaaacctgc ctgtccttgg ataaggacac
     1681 cgcacaggaa acacactgtg gaacaggcac tgcagacggt ggtgtgggaa accttagcaa
     1741 gactgaccta aggctggaag tgaagctaga gggagccagt gcctctttgg tgatgcaact
     1801 tagaactgat cagctgtagc tggtgatcag ctgggaatcc tgcctgattt gcctgtcagc
     1861 caccctgggt atggccctgg ctgctggact ttgccatctg taccctcagt cttaccacaa
     1921 gcggacagaa agggtccttc agatgcttct tactgcagat gctgttgcca ggagtggcag
     1981 tgcggaggct gtgcatgaca ggaggacagg tgataactga atctctctgt gggggacaaa
     2041 aaccttgtcc tctgaagaga ccctcggact gggcccctcg gtggctccac agagtgcctt
     2101 agtcaaaaac gagctaatga gaatttccga cgaggccaag gccccctgtg cctgctgtca
     2161 gtgtgaagtg agctcaggaa gcagcaaagg ggcagactta tcaacagagg gaattcgtct
     2221 cctgctttgt tgtcttaatg cctgtaattt tgcttctttt ttcccttctt gcaattagac
     2281 gttctgtttg aagagttaaa ctcgacacaa tgaatattgt ataacctgct cattagctag
     2341 actcctgtgg ccgtgaagct tcctctgttg cctgaaggag cccgcagaaa tagacgtcct
     2401 gtcctctgta gtgtctcagc ctcatctcct ctaacccttt gaaaaaagtc gtgttggggc
     2461 ttagctcttg cgagaaagaa agatctgtac tcctccctgt gcctctctaa agcaccccaa
     2521 aaggagttgt cctttcacag tcgacattcc aaaactagtt agaggtcggg ctcaggaaag
     2581 caggtgtagg tgagggcagt ctgtctgtct gtctgtctgt ctgtctgtct gtctgtctgt
     2641 ctgcaagcac acgatccttg gtcgatcact gtgcaggcac atgcagagca agcagtttag
     2701 agaacttgat ggatcacagc ttgggaaagg tatccacgca gcgcaaggcc acaagctcca
     2761 gagtggaacc cgcaagcctg tcaccaggca gcagatgtgg gacttcccag tctttgccct
     2821 gacgaataag ggactcgtgt tttccagcag ctggcaagca tgctaccttt tgccaaaggg
     2881 gacactagaa acaacctgac caacttgaag agcagccatt ccttggctga ttgagggaag
     2941 aaagcatctt tgatgaagac gatttgccct cctgacttta tgaagcttgt ttggtttagc
     3001 aagggtacct agtaccagaa cgccaggttc tgagaccatc cattctggtg tttgtgtgat
     3061 aacacaatgg gattagctgg aagcagaagt gaacccattg cagaacggct acatctgtat
     3121 taatatggaa acataaaacc caccagtttg gacaggagac ttatcttcca cccaagtccc
     3181 aatagtaagg tgatggaaac tgttgtattg cattttgccc tcctataact tgatgaagac
     3241 aggctcacga agttctaaga acaaaacact gtgccccatt taactgcaaa gacactgtgt
     3301 agaccgatgt gagaaaagtg ttgctttgat tttccctact gattttagct ccttgggtat
     3361 tgactgagag actctgctct cttgcatctg ggggaggcag tgcttggaac attaggtata
     3421 taaaaaccta ggtaaattgt atgtccatga atgaatgtgt cctaagaaca ctgaggaatg
     3481 aaccaaacat atttaattcc ggcgagtgcg aggaatatcc cttctacaga tctaataaac
     3541 acacaccctt cttacttctc tctaaactga agataaagat cccacaagtg tacccttact
     3601 tggccttgtc acatgtgcac tgttcatgaa aacttttgag atcttcctgt gcaagacaga
     3661 gtctgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt ctcctggtat gtgtctatct
     3721 gtgtgtgtgg ctgagtgtgt ctgtatttgt ctctgtgtgt gtctgtctgt gtgagtatct
     3781 gtgtgtatgt ctgttgtagg gagctgtatt ggatttgggc ctggctgctt tgtgactgta
     3841 tagctcaaag tggctacgtg actctgggct atatggccac agatactcag gcctaagatg
     3901 actgccataa agtcttgaga ttgttggaca aaagcctctc ccatgaattt acggcacagg
     3961 aagataacaa tcatggaatg cttcagcccg agcaaatacc agatgtctcc tgagcaaaca
     4021 ctagatgtct ccaccgcctg acctcttcgt ctaccgcctg acctctttgc ctcctgctat
     4081 cactgcctga atacctttac ccctccctcc tttgtgtttc acaaagggca ctccccctat
     4141 ctgaatgcct tataagccgt aacactcacc ccaataaaca agaccttgac aacagaacct
     4201 tgcttggtgt ccttcttttc tccccccctt gacccttagg tagcgcctct tcggaaccct
     4261 gaataactga acccgctgga caggtcagtc tgtgagtgtc tgtgtgtatc tgtgtgtctg
     4321 tatgtatgtg tgtgtttgtc tgtgtctgtg tgtacg
//
