LOCUS       NM_001108468            2632 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus retinol dehydrogenase 13 (Rdh13), mRNA.
ACCESSION   NM_001108468 XM_001071011 XM_341783
VERSION     NM_001108468.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Wang,H., Cui,X., Gu,Q., Chen,Y., Zhou,J., Kuang,Y., Wang,Z. and
            Xu,X.
  TITLE     Retinol dehydrogenase 13 protects the mouse retina from acute light
            damage
  JOURNAL   Mol Vis 18, 1021-1030 (2012)
   PUBMED   22605914
REFERENCE   3  (bases 1 to 2632)
  AUTHORS   Belyaeva,O.V., Korkina,O.V., Stetsenko,A.V. and Kedishvili,N.Y.
  TITLE     Human retinol dehydrogenase 13 (RDH13) is a mitochondrial
            short-chain dehydrogenase/reductase with a retinaldehyde reductase
            activity
  JOURNAL   FEBS J 275 (1), 138-147 (2008)
   PUBMED   18039331
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474075.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001071011.1, XM_341783.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132265 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..2632
                     /gene="Rdh13"
                     /note="retinol dehydrogenase 13"
                     /db_xref="GeneID:361504"
                     /db_xref="RGD:1304959"
     exon            1..205
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..1145
                     /gene="Rdh13"
                     /EC_number="1.1.1.300"
                     /note="retinol dehydrogenase 13 (all-trans and 9-cis);
                     retinol dehydrogenase 13 (all-trans/9-cis)"
                     /codon_start=1
                     /product="retinol dehydrogenase 13 precursor"
                     /protein_id="NP_001101938.1"
                     /db_xref="GeneID:361504"
                     /db_xref="RGD:1304959"
                     /translation="MNRFLLPVSVVGTVIGGTVLLKDYVAGGACPSKATIPGRTVIVT
                     GANTGIGKQTALELAKRGGNIILACRDREKCEAAAKDIRGETLNPRVRAEHLDLASLK
                     SIREFAGKIIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDK
                     LKASAPSRIINLSSLAHVAGHIDFEDLNWQIKKYDTKAAYCQSKLAVVLFTKELSRRL
                     QGTGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAV
                     AEELESVSGKYFDGLREKAPSPEAEDEEVARRLWTESAHLVGLDMAHGSSGRGHSISR
                     "
     exon            206..324
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     exon            325..480
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     exon            481..585
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     exon            586..798
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     exon            799..900
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
     exon            901..2632
                     /gene="Rdh13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacgccccaa agccgggttc tggtggctgt gtcgttccac ttcctcgcta cacgagcgca
       61 cgtggggtct tgggcagcgc attcgtccgc ggagtggccg tggagtgcaa atacactgat
      121 accctgttct ccagcctggg atgaatcgct ttctgctgcc ggtgtccgta gtgggcacgg
      181 taatcggcgg caccgtgctg ctcaaggact atgtcgctgg tggggcttgt cccagcaagg
      241 ccaccatacc tgggaggact gttatcgtga caggagccaa cacaggcatc gggaaacaaa
      301 ctgctttgga gctggctaaa agaggaggca acatcattct ggcctgccgt gacagggaga
      361 agtgtgaggc agctgcaaag gacattcgag gagagacctt gaatccccgt gtgcgtgccg
      421 agcacctaga cttggcttcc ctcaagtcca ttcgagagtt tgcagggaag atcattaaag
      481 aggaggagcg agtagacatt ctggtcaaca atgcagcagt gatgcggtgc ccacactgga
      541 ccaccgagga tggctttgag atgcagtttg gtgtcaacca cttggggcat tttctattga
      601 caaatttgct gttggacaag ctgaaggcct cggccccatc acgcatcatc aatctctcct
      661 ccctggctca tgttgctggg cacatagact tcgaggactt gaactggcag ataaaaaagt
      721 atgacaccaa ggcagcttac tgccagagca agttggctgt tgtcctcttc accaaggagc
      781 tgagtcgccg gctgcaaggc actggtgtga ctgtcaatgc gctgcaccct ggcgtggcca
      841 ggacggagct ggggcgacat acaggcatgc acaactctgc gttctctggc ttcatgcttg
      901 ggcccttctt ctggctgctg ttcaagagtc cccagctggc ggcccagccc agcacatacc
      961 tggctgtggc agaggaactg gagagtgtct ctgggaagta ctttgatgga ctcagagaga
     1021 aggctccatc tcctgaggct gaagatgagg aagtagcccg gaggctttgg actgaaagtg
     1081 cccatttggt gggcttggac atggctcatg ggtcctctgg gagaggacat tccatctcca
     1141 gataaccttc agaaatccag atggagcctc atcatcctct aggggcagtg ttggtattgt
     1201 tagaatctca agactgtgga tgttggctgc catgaccctc atcatcctct aggagcagtg
     1261 ttgtactact cgaactgaag actgtggatg ctggctgcca tcctctgggt ggctgtgttg
     1321 gtcctagcat tattgttagc tggctgcttt ggtttggacc acgggatggc aggcacatgt
     1381 actcttttgg ttactgggga gatagtccat tggtgcctcc tacaggaatc taaaagcggg
     1441 gaagctgatg gaggagtcag tcactctagt tatgggcagt gtccaaagac agtggacacc
     1501 aaagctgcag tagtggactg attgatccac tgtgaaagag caagtaatca gacaaatatg
     1561 gctgtagagc tttgtgggcc cttgcacatg tctgcctcct ctctgacttg gctgttgttc
     1621 tagtttgctt tctgttgctg tgataaatac catgaccaaa atcaacttgg ggaggaaaag
     1681 ggcttattta acttacaggt tatagtttac catggaagag ggaaaccagg gaaggaactc
     1741 aggacaagaa cttgaagcag ataccagata caacggaggt ttgctcccag gcatacatca
     1801 gataccttta ttttattttt attattgtta tttttttata gagagggtct cactttgtaa
     1861 ccctggcctc cctggaactt gctatgtaga tcaggctggc ctcaaactca cagagacctg
     1921 ccttctggga ttaaaggctt gaattattag gcttggccca ggtaccagtg cagcctacct
     1981 gcccagggat ggcaccatct gcagtggggt tctacctccc atatcaacta gcaatcaaga
     2041 aaatgctcca caaacattcc ctcagggcag tctggtctaa gcagttcttc aggcgagggt
     2101 ctgtctgtct atcttctagg tatgccaggt tgacaaacaa atgaaccaga cggctcttga
     2161 ttgcaaactg caaagggtgt ctgctacctc agggatggtg tgggcctgaa gctcttgccc
     2221 aactcagtaa agggcagctg tggacacttg tgtactggac actggctgag gggctgggat
     2281 ccagtggaaa ccctggcctt tgttagccct gaagtaatca ggacagaatg gagtgaaaag
     2341 ctgctagctg ctgcctcaga aaatgagtgt gacctgggat cacgatctct ccagttcctg
     2401 tgtaatttta accttagcct ctcaagcatg ttgtttgatt ataataacaa gctagataga
     2461 ggtagtggca cacttcagta gctccagcac ttaagaggga gaggcaggag tatcaaaagt
     2521 ccaaggtcat ccgaggccag cctgggctat atgagattct gccgaaacaa agcaaaacgg
     2581 tgagatctcc aaatggctga ttcatagatt taaaataaag acatacattt ag
//
