LOCUS       XM_039091509            4980 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RD3 regulator of GUCY2D (Rd3),
            transcript variant X2, mRNA.
ACCESSION   XM_039091509
VERSION     XM_039091509.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091509.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4980
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4980
                     /gene="Rd3"
                     /note="RD3 regulator of GUCY2D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 11 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:684158"
                     /db_xref="RGD:1593897"
     CDS             3028..3615
                     /gene="Rd3"
                     /codon_start=1
                     /product="protein RD3"
                     /protein_id="XP_038947437.1"
                     /db_xref="GeneID:684158"
                     /db_xref="RGD:1593897"
                     /translation="MSLIPWLRWNDTPPRLSARSPAEMVLETLMMELAGQMREVERQQ
                     RERRSAVRKICTGVDYSWLASAPRPTYDISPGERLQLEDVCAKIHPSYCGPAILRFRQ
                     LLAEREPEVQEVARLFRSVLQEALEKMKQEEEAHKLTRQWSLRPRGSLSSFKTRARIA
                     PFASDIRTISEDVERDAPPPPRTWSMPEFRAPQAD"
ORIGIN      
        1 tatccatccg catacccaac tgcccaggca tccattcacc catcattaca gatgctggga
       61 ggatgggtct tatggcgact gagatccact ctatctctgt ggggaacagc aagggccagg
      121 ctacagggag aagttgactt ttagacactg gtttgaggga taagcagtct tcgtcaggta
      181 ggtgaaagac cccaaggtca ggcgggttcc agagcaggtc acatacagcc tgtctggtcc
      241 ctggagtctt ggtgaattat ggataatttt tctaatgcca aaaagaaaca aggtgatctt
      301 gtagcttgtg aagttgacct tggccctgag aaaagcagaa ttagtcagag agatgagcag
      361 ctacatgtgc tttctgggcc tctgccaggc cccagggtct gggctcagct gatacagcct
      421 gctccaagag gtgacctctg ctccgggaca gcctgggtca agtgacctga agccctaggg
      481 tccccaggaa cagagccctc cctagcctgc agatattcag ctgaaccgtg gaagccccgc
      541 tatacaaggg gatcctcagc tgctgccctg ggtgtgggtc cctctggacc aataagtcag
      601 ggttcttgga tcaaggatag cgtcctcttc acggtgtggc actagtgagc acagtggacc
      661 cctctaactg tctggaacca gagtcctctt gcctttggga ctcagggaag gctttgagtg
      721 tttctaaggt gagaagtcac tgtcctgagg gatgttcaga aatagaccag agcggaggct
      781 cggagagtgc gcagaggtga cagtgcaaca aaggggagag gtggggagtg agaggagagc
      841 gaaaccccag gggcctgcaa tcagttcctc agctctccct acacagccac cagatcacag
      901 ggcctagggg ggccagggtc cagcttgggg tcaaacttgc accaggttgg gttgtggtgt
      961 gcacaggaga ggctttcctt tctgttctct agacaggtct tgcaggtctg agaacatgtt
     1021 ttctgaaaaa tgtttctgca taaagtcaca aaggttgaat tagtgaaaac cagctttgta
     1081 gaaatgtagc tgctaaaatc tctctaaaat caggttatga cccagtgata tctgcacttt
     1141 tctagaatca ggttagatga caagatctag tggcatagct aataaacacc agtgtttcag
     1201 agtaatggga atgcaatatt ttacaaatcg caactttgag gggttgggac tattatttgt
     1261 gtaaagtcac aagtgaaccg gacactcatg gttgtatgat ggtcattcat gcccggaaaa
     1321 aatgctacac taaaatattt tagatttatt ttgtgtatga gcgttttgcc tgcatatatg
     1381 tgtgtgcacc acatgtgtgg ctggcgcctg tggaaatcag aagggggcat cagacacccc
     1441 agaattgtga gtcacggtgt gggtgctggt cctctgcaag agctttgagt gcttttagct
     1501 gcagttatct ctccagaccc taaatgttac attttaagtt aaagatggaa acaaagtttt
     1561 acaagtccat cacttgattc tcctaggagc ccagggaaca gtccctgcag taagggccag
     1621 tgacagccac aggcagactg gccttgtgac acatgaagct tttgtcaatg tttatctggt
     1681 tttacaggaa cttgtaacct cattataggt ggggaaactg agactccact gatctggaca
     1741 taggctagat gtgtcaggta tggctggtat tccctcacca gcctcagcat ttgttagggt
     1801 ttcgaatctc ggctggtgcc cggaaagaac acaaccagac atggttccac gtggagaggt
     1861 ttaatgagag aagagtagaa gagcagaaag gcggttggcc atgggcacgt ggaggggagg
     1921 gggaatgggg caagaacagc gaagaacgaa gagtaagagg aggaggagag ggcaagcagc
     1981 cccctttata gtcaggcaca gctggctgtt gccaggcaac tgtggggcgg agcatacctg
     2041 gttgtcgaag gtggctgtgg gggtggagct tagacagaac accaacaagc atgcctcatc
     2101 agagtcaact gaccagaggg atgggggaca gcctgaccac caagcatgtc tgaggctaaa
     2161 gggattgtga acccaggaag ggtgaggctg tgctccgtgg cagaagagac caggagagag
     2221 aagaggggag gagctttcaa ctgaattcag catccatctt gcctcatttc ccagacttga
     2281 gagagagaga gagggatatc ctcaaggttc tcacagaccc agtgtaaaga acactggggc
     2341 tctttatagt cttgggaccc tcagtgcatc accctgactg actttcattt cttcccaccc
     2401 tgtgtcactc taagcaggac agcatcctgc ccattttccc tgccacctgg caggcagagg
     2461 cagccctcac ttccagactg ggtaccaggt tctgggatgg cagaccccag gcgttgcata
     2521 ggacacagct tcttttgtgt gtcacaaaca ttctggggag tgtgctgccc catatgtcaa
     2581 ccctgtgtgt agatgagcag tttaaggcct ggctggtcag gggggtgggg cagggagctc
     2641 tcagtaggga tgagatgatc tgggtgtcct cccagatggg cacacactga agacagagtg
     2701 tcttccatcc agaagtgcgg tctcctgtgg aagcattgca atggctctcg ctagagaccc
     2761 cccactcaga cgccaagtgt tacctcaagc ttacaccacc acaccaatct ttgaataggc
     2821 ttctgaggga gccccacagc tagaacagca gaaggcatgg cccgtggcac aggactgctg
     2881 agacccagca tactgcctgt gcctgctggt ggagaatccc atgtgctgac atgccgggaa
     2941 gttggaagga agtaaaacaa ataccgaaaa attgagaaag caattgtttt tgctgtgtgc
     3001 tggagttaca gaagggcctg gggggccatg tccctcatcc catggctccg gtggaacgac
     3061 acccctcccc ggctctcagc ccggagcccg gcagagatgg tgctggagac actcatgatg
     3121 gagctggccg ggcagatgag agaggtggag cggcaacaga gggagcgtcg cagtgcggtt
     3181 aggaagatct gcacgggtgt ggactacagc tggctggcca gcgcgcccag acccacctat
     3241 gacatcagcc ctggtgagcg gctgcagctg gaggatgtat gtgccaagat ccacccatcc
     3301 tactgtgggc ctgccatcct caggttccga cagctgctgg cggaacgaga gcccgaggtg
     3361 caggaggtgg cgcggctgtt ccgctctgtg ttgcaggagg ccctggagaa gatgaagcag
     3421 gaggaggagg cccataagct gactcgtcag tggagcttga ggccccgcgg cagcctgtcg
     3481 tcttttaaga cccgcgctcg catcgcgccc ttcgccagtg acatccggac catctcggag
     3541 gacgtggagc gcgacgcgcc acccccgccg cgcacctgga gcatgccgga gttcagggcg
     3601 ccccaggccg actgaccacc ctgggcagtc accctcagga gggaatgatg ggccggtggc
     3661 tgggtggctg ggtcgccggt gccggaacct ccccacctaa cccgactggg agacccatca
     3721 cgcagcactg ctagaccacg gagtcaacta attgagcaca cctgcttggc tacggggtag
     3781 agttgggact tgagcactgt ttctccccca aaaggtctcc acttgccagc ctgacataga
     3841 aaaaaggtct ggtgttggag caagttcttc tctgtctcct ctgtctggaa caaggaacaa
     3901 gtgtcttttc cctcttttgc aaggccggca tacatatccc aacttccggg atgccattca
     3961 ccttatccag tcagggcacc tttactagta accagatgac attcactgca ggggacccac
     4021 agcctcaggc ccaggacagc tagtggggtc catagagact cttcaatcca ctgttcagtt
     4081 agagagtgga aaaaaaaaaa caaaaacaaa aacaaaaaaa aaacaaacaa aaaaaaaccg
     4141 agtctcccaa gggtctccct gcttttgttt gccttaactc tgatccctct gatgtgggcg
     4201 tgttcttgcc tgagtccttg aatgctggac tatgacaggg cagggccaat gtctgcatct
     4261 ccattcacta aggccgaggc tgctctccta gaaagttagc taggggtagg caggatgacc
     4321 ctaactccca tcctgcagtg tcatcacatg gtgtgtggcc agtccagagt cagggcttgg
     4381 aggcttgcaa accctgctgc tgaagtctag ggatccttct gttcacacct gctctccagc
     4441 ttccctagga agtgcctgag caaaccagtt cagagtagtc tcctgcagcc tcatgctctg
     4501 atggtatatg agtgggtcac ctgtgaaaga tttgcaaggc caggtggccc gcacaatcta
     4561 ggatagaagt agggttcagg ggaagagggt aagcaaaatg tccccagcac ccaatgcata
     4621 tccagaaaac acaagtgaac cttatagtct aaataaaatg caacgggagg aaagtcacta
     4681 ggtactgcat gtagtccggt tcagtggaaa gtctacgtct attcccctct gccttcctcc
     4741 ctctcctctt cagggcaggg cctccctatt ttggctgttc cagcctcttg agtgctgagt
     4801 ctacggcacg gatattcttt ttgaatgatg tgctttgggt tgcctcgctg gggtctggat
     4861 ggaggatgag aggatggcac attcctctta gccattgctg ccgggatgaa ggagctgact
     4921 ggctcaatag tataacctct tctaaataaa aacatcttaa acatcttcta ttggaagata
//
