LOCUS       NM_001415737            2681 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus RCSD domain containing 1 (Rcsd1), transcript
            variant 2, mRNA.
ACCESSION   NM_001415737 XM_006250181
VERSION     NM_001415737.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Eyers,C.E., McNeill,H., Knebel,A., Morrice,N., Arthur,S.J.,
            Cuenda,A. and Cohen,P.
  TITLE     The phosphorylation of CapZ-interacting protein (CapZIP) by
            stress-activated protein kinases triggers its dissociation from
            CapZ
  JOURNAL   Biochem J 389 (Pt 1), 127-135 (2005)
   PUBMED   15850461
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Dec 28, 2022 this sequence version replaced XM_006250181.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.32091.1,
                                           SRR26643290.42739.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000013.1  80497107-80497276   c
            171-272             JAXUCZ010000013.1  80451638-80451739   c
            273-362             JAXUCZ010000013.1  80449988-80450077   c
            363-434             JAXUCZ010000013.1  80445888-80445959   c
            435-638             JAXUCZ010000013.1  80443703-80443906   c
            639-1370            JAXUCZ010000013.1  80442214-80442945   c
            1371-2681           JAXUCZ010000013.1  80434878-80436188   c
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q23"
     gene            1..2681
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /note="RCSD domain containing 1"
                     /db_xref="GeneID:360872"
                     /db_xref="RGD:1304715"
     exon            1..170
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     CDS             165..1403
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /note="isoform 2 is encoded by transcript variant 2;
                     capZ-interacting protein"
                     /codon_start=1
                     /product="capZ-interacting protein isoform 2"
                     /protein_id="NP_001402666.1"
                     /db_xref="GeneID:360872"
                     /db_xref="RGD:1304715"
                     /translation="MEERPSETNSNVDSSAQPSVAQLAGRFREQAAVARETPASKPTR
                     RKPPCSLPLFPPKVELGQNGEEKSPSSTSHPPKIKVKSSPLIEKLQANLAFDPAALLP
                     GASPKSPGLKAMVSPFHSPPSTPSSPGIRSHPGEAEEVPVSFDQPPEGTHLPSYNKVR
                     TRGSIKRRPPSRRFRRSQSDCGDLRDYRAVEPSQENGAREENGDDVFPSKSKDPGSPQ
                     PNQEAGADRVEGTLRSTEKPRRRNTCSSTEKPEELVGTLEEANAGAKAGQTPDTASQG
                     HPEVQEPSQTCSPETENGCGSPREETAPGEHTDTGKATEGTASEERVTEEEDGLGQKS
                     PDANIPEDEVVRGKVPQTSSGEAEGTTVPEPEAKQKEEAPLEPSGSPGADHSAGEASN
                     EIQSENAVSTEDIPVEDTRM"
     exon            171..272
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     exon            273..362
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     exon            363..434
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     exon            435..638
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     exon            639..1370
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..2681
                     /gene="Rcsd1"
                     /gene_synonym="RGD1304715"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcccgcag ccgagtgcag ccaggcgcgc gccaccgccc actcgccctg tggccgctac
       61 agcccaaaag taccccgggc tgggagctga ggggacagcg gggatcctga gctcttaacc
      121 cgagcgagcg ggcgtgtccg cagccggagg actacctgga ggacatggag gaaagaccct
      181 cggagaccaa ctccaatgtt gacagctcag cgcagccttc agtggcccag ctggctgggc
      241 ggtttcggga gcaggcagct gtggccaggg agacaccagc cagtaagcca acaagaagga
      301 aaccaccctg ctccctcccc ctcttccccc ccaaggtaga gctgggccag aatggtgagg
      361 agaaatcacc atccagcacc agccacccac ctaaaatcaa ggtgaagagc tcacctctga
      421 ttgagaagct ccaggccaat ttagcctttg atccggcagc tcttctgcct ggggcttcac
      481 ccaaaagtcc cggactcaag gccatggtgt cgccatttca cagtccccct tccacaccca
      541 gtagccctgg catccgatcc cacccaggtg aggcagaaga ggtgcctgtg agctttgacc
      601 agcctccgga aggtactcac ctgccctctt acaataaggt aaggactaga ggctcaataa
      661 aaagacgtcc tccctcgagg cgattccgaa ggtctcagtc ggactgtggg gacctcagag
      721 attacagagc tgtggaacca tctcaggaaa acggtgccag ggaagaaaat ggggatgacg
      781 tgtttcctag caagagcaag gaccccgggt ccccccaacc caaccaggaa gccggggcag
      841 atagggtaga aggaaccctg aggtctacag aaaagccacg gaggaggaac acgtgcagca
      901 gcacagagaa gccagaggag ctggtcggga ccctagagga ggcgaatgcc ggagcgaagg
      961 ctggacagac tccagacaca gccagtcagg gtcatccaga ggttcaggag ccatcacaaa
     1021 cctgcagccc agagactgag aatgggtgtg gaagcccacg ggaagagaca gcccctggag
     1081 agcacacaga cactgggaag gccacagaag ggacagcctc tgaggaaagg gtaacagagg
     1141 aagaggatgg gcttggacag aaaagcccag atgcaaatat acccgaggac gaagtggtca
     1201 gggggaaggt cccccaaact tcttctggag aagcggaagg taccactgtc ccagagccgg
     1261 aagcaaagca aaaggaggag gcgcctctgg agccaagcgg cagcccaggg gccgaccatt
     1321 cggcaggaga ggccagcaat gagatccaga gtgagaatgc agtctccacg gaagacatcc
     1381 ccgtggagga tacccgaatg tgatgaagag ctcagggtac cagtgatggg gccactggag
     1441 acgtctcctt ggaaacagca gcagcagtag cagcagtagc agttgatgga gcaggggaac
     1501 acactgagca cccggaggca gcccagaatg cagggcggat tgtctcccgt aggctccacc
     1561 aagccttgtc agagaccaga gctgaggaca gtagagtttt gtcaacctga gtctgcgcca
     1621 tccgatgcac cgactcagag ttaaatatat ttaaagcagt ttgctgtggc gtctactcca
     1681 cagcaatcct ggccttcctg ttgcccccct cccccaggcc ttcctgcagc cgacctccca
     1741 actaggctct tgttgaactt gtgtaaagtt acagtctttt tctattgttc taacgttttt
     1801 atggttctca gatgtaactt aagaaaaaaa acaaactaat tttaggtaga taaagaagac
     1861 agtcttgtgg agaataaaat cctctgagtt ccagagacct gaaaaggtat caaagtcctc
     1921 actatgatct ttctgtttgc tccacatggg gaacagctga ccagtttcca aaaacaaagc
     1981 aagatattta ttaaaacatg taaaaatttt gttcctgtct gttccaaggg caggcgcttt
     2041 ccctgtccca cagccgggat gatgagaaca agggaagtga ttggtccatc ccatcccatg
     2101 ctgccctgtt acaggaactc cctcagagag gcagggtatg acattgtggc tttgtgcttc
     2161 atttcccccc tgaaggtgca acagtatctg cctcctccaa gcactggttg cactctccta
     2221 caaggttaca cttgaacagg aaactggcta acctctggga caggtgctga gtgtccacag
     2281 cgcaacttac cttctgagag catcctccct cgtagcttct ctatgaagcg tttgtttgtt
     2341 tgatcttgat tttttttttt taatctcacc atgtagcctt caacttacta tgaagcccag
     2401 gctggttttg aactagtgag ccccctgcct ctgcctctgg attgtaggta cgcatcatcg
     2461 tgcctggctc tcagtaagca tttctcaaat ccaagtccaa gttcttctcc cagactcagg
     2521 aggcatgagt tggggccgtc agcccgtttt catcaggaag tcctgcttag tatcctgtct
     2581 ggggacaaaa cagggtttgt agggatgggg gtcagtctga tatccatctc cccatgcact
     2641 cctgctgaag aattgttaac ctaaataaat gttgaatctt c
//
