LOCUS       NM_001399456            1781 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RNA terminal phosphate cyclase-like 1 (Rcl1),
            transcript variant 1, mRNA.
ACCESSION   NM_001399456 XM_006231208
VERSION     NM_001399456.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Sloan,K.E., Bohnsack,M.T., Schneider,C. and Watkins,N.J.
  TITLE     The roles of SSU processome components and surveillance factors in
            the initial processing of human ribosomal RNA
  JOURNAL   RNA 20 (4), 540-550 (2014)
   PUBMED   24550520
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Wang,M., Anikin,L. and Pestov,D.G.
  TITLE     Two orthogonal cleavages separate subunit RNAs in mouse ribosome
            biogenesis
  JOURNAL   Nucleic Acids Res 42 (17), 11180-11191 (2014)
   PUBMED   25190460
REFERENCE   3  (bases 1 to 1781)
  AUTHORS   Billy,E., Wegierski,T., Nasr,F. and Filipowicz,W.
  TITLE     Rcl1p, the yeast protein similar to the RNA 3'-phosphate cyclase,
            associates with U3 snoRNP and is required for 18S rRNA biogenesis
  JOURNAL   EMBO J 19 (9), 2115-2126 (2000)
   PUBMED   10790377
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 7, 2022 this sequence version replaced XM_006231208.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.6393.1,
                                           SRR26643288.6784.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-221               JAXUCZ010000001.1  236238115-236238335
            222-293             JAXUCZ010000001.1  236255842-236255913
            294-469             JAXUCZ010000001.1  236258667-236258842
            470-544             JAXUCZ010000001.1  236261720-236261794
            545-669             JAXUCZ010000001.1  236262056-236262180
            670-795             JAXUCZ010000001.1  236267896-236268021
            796-952             JAXUCZ010000001.1  236270446-236270602
            953-1056            JAXUCZ010000001.1  236272806-236272909
            1057-1781           JAXUCZ010000001.1  236281873-236282597
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..1781
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /note="RNA terminal phosphate cyclase-like 1"
                     /db_xref="GeneID:309301"
                     /db_xref="RGD:1305320"
     exon            1..221
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1207
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /note="isoform 1 is encoded by transcript variant 1; RNA
                     3'-terminal phosphate cyclase-like protein"
                     /codon_start=1
                     /product="RNA 3'-terminal phosphate cyclase-like protein
                     isoform 1"
                     /protein_id="NP_001386385.1"
                     /db_xref="GeneID:309301"
                     /db_xref="RGD:1305320"
                     /translation="MATQAHSLSYAGCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGL
                     RDFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLEAL
                     LCLAPFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKILRRGMP
                     PGGGGEVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARGILNK
                     FIPDIYIYTDHMKGVNSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAVLPEDLG
                     RNCAKLLLEEIYRGGCVDSTSQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSF
                     FQVMFKVETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK"
     exon            222..293
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            294..469
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            470..544
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            545..669
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            670..795
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            796..952
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1056
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1781
                     /gene="Rcl1"
                     /gene_synonym="Ab1-353; Ac1292"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgttctaaa ccacgtggac gcgtcggggg ccactgtggc ccgggtcgcg ctccccgctc
       61 ctctgcctct gcggacggtg cgcacatggc gacccaggca cactccctca gctacgcggg
      121 gtgtaacttc ctgcgccaga ggctggtcct gtccaccttg agcgggcgcc cggtcaagat
      181 ccgcaggatt cgggccagag acgacaaccc gggcctccga gattttgaag caagctttat
      241 aaggctgttg gacaaaataa ctaatggttc tcgaattgaa atcaaccaaa caggaacaac
      301 cttatactac cagcctggcc tcctgtatgg cgggtccgtg gagcacgact gcagtgtcct
      361 ccgtggcatt ggctattacc tggaagctct gctttgcctg gccccgttta tgaaacaccc
      421 attaaaaatt gttcttcgag gagtgaccaa tgaccaggtt gatccttcgg ttgatgttct
      481 taaggcaaca gcacttcctc tactgaaaca gtttgggatt gatggagagt catttgagct
      541 aaagatcttg cgacggggaa tgcctcctgg aggaggaggt gaagtgcttt tctcctgccc
      601 cgtgaggaag gtcctgaagc ctgtccagct cacagaccca gggaaaatca agcgcatcag
      661 aggaatggcg tactcagtgc gtgtatcacc tcagatggca aaccggattg tggattctgc
      721 aaggggcatc ctcaacaagt tcatccctga catctatatc tacacagatc acatgaaagg
      781 cgtcaattct gggaagtctc caggcttcgg gctgtccctg gttgcagaga ctaccaacgg
      841 taccttcctg agtgctgaac tggcctccaa tccccagggc cagggagcag cagtgcttcc
      901 tgaggacctc ggcaggaact gtgcaaagct gctgctcgag gaaatctaca ggggtggatg
      961 tgtggactca accagccaaa gtctagttct gctgctcatg acccttggac agcaggacgt
     1021 ctccaaagtc ctgctgggac cactttcccc ctacacgata gaatttttgc ggcatttgaa
     1081 gagttttttc caggttatgt ttaaagttga aaccaagcct tgtggtgaag aactcaaggg
     1141 cggggacaaa gtgctaatga cctgtgttgg tattggcttc tctaacctca gcaagaccct
     1201 caagtgatcc tgtgagacag acagcgggct ccgctgtgtg tggatgagac cgagtgccaa
     1261 gggccagcgg gaccacagcc agacatgtcc acgcaggaca gcacagcctc ctaacattaa
     1321 agacttcatt tcttttccat tgaaagtaca gatgtgccaa tgaaagctgt ttctaccacg
     1381 tggctgccag ctggttctcc agtgacatcc gtcagaggcc caggctgtgg gcttccgact
     1441 cacctggagg agaggccgtc gggaagtggc catctgctgt acagtgtcct ggcagtgctt
     1501 ccttgacttc gcactgtggt tttgtgtagg ggttcatgtg actgtgggca caagtcctct
     1561 agtcatgaca ggctaggaga tcgccaacgg ctgggacatt tgctttatct tgtgaatgag
     1621 ttgcctgcac gtgctatact aaatctggta aattgtgtgt gtttgggtct ggtggtgggg
     1681 atggggagga catgtcttca atgttttctg taccccaggt atggcataaa atttgttttt
     1741 attcttctta ttgcactgta gtgtaaatta ttataagaaa a
//
