LOCUS       NM_001108332            2262 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus RCC1 like (Rcc1l), mRNA.
ACCESSION   NM_001108332 XM_001077926 XM_341066
VERSION     NM_001108332.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2262)
  AUTHORS   Koyama,M., Sasaki,T., Sasaki,N. and Matsuura,Y.
  TITLE     Crystal structure of human WBSCR16, an RCC1-like protein in
            mitochondria
  JOURNAL   Protein Sci 26 (9), 1870-1877 (2017)
   PUBMED   28608466
REFERENCE   3  (bases 1 to 2262)
  AUTHORS   Huang,G., Massoudi,D., Muir,A.M., Joshi,D.C., Zhang,C.L., Chiu,S.Y.
            and Greenspan,D.S.
  TITLE     WBSCR16 Is a Guanine Nucleotide Exchange Factor Important for
            Mitochondrial Fusion
  JOURNAL   Cell Rep 20 (4), 923-934 (2017)
   PUBMED   28746876
REFERENCE   4  (bases 1 to 2262)
  AUTHORS   Arroyo,J.D., Jourdain,A.A., Calvo,S.E., Ballarano,C.A.,
            Doench,J.G., Root,D.E. and Mootha,V.K.
  TITLE     A Genome-wide CRISPR Death Screen Identifies Genes Essential for
            Oxidative Phosphorylation
  JOURNAL   Cell Metab 24 (6), 875-885 (2016)
   PUBMED   27667664
REFERENCE   5  (bases 1 to 2262)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   6  (bases 1 to 2262)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   7  (bases 1 to 2262)
  AUTHORS   Merla,G., Ucla,C., Guipponi,M. and Reymond,A.
  TITLE     Identification of additional transcripts in the Williams-Beuren
            syndrome critical region
  JOURNAL   Hum Genet 110 (5), 429-438 (2002)
   PUBMED   12073013
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473973.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_341066.3, XM_001077926.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..2262
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /note="RCC1 like"
                     /db_xref="GeneID:360796"
                     /db_xref="RGD:1307558"
     exon            1..368
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..1439
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /note="Williams-Beuren syndrome chromosome region 16
                     homolog"
                     /codon_start=1
                     /product="RCC1-like G exchanging factor-like protein"
                     /protein_id="NP_001101802.1"
                     /db_xref="GeneID:360796"
                     /db_xref="RGD:1307558"
                     /translation="MLAVARALLERRLSWPVPAREHWRPAGRSRSRREAAEAEADAPV
                     FQYVGERAARADRVFVWGFSFSGALGVPSFVVPSSGPGPRAGLRPRRRIQPVPYRLEL
                     DHKISSAACGYGFTLLSSKTKDVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSP
                     VPLPLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNAHGQCGRKVVEDEVYSESHK
                     VHRMQDFEGQVVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSTPSKLGGD
                     LAGVTVVQVATYGDCCLALSADGGVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGK
                     VKQVACGGTGCAILNEEGHVFVWGYGILGKGPNLSETALPEMIPPTLFGLTEFNPEVK
                     VSQIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGV
                     DHMVTLAKSFI"
     exon            369..498
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            499..627
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            628..694
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            695..746
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            747..831
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            832..1013
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1101
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1275
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1361
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..2262
                     /gene="Rcc1l"
                     /gene_synonym="Wbscr16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaggtgagg caagatggcg gcgcccataa acggttgagg cgtgaagcga aggatgctgg
       61 cggtggcccg ggctctgctg gagcggcggc tgagctggcc ggtaccggct cgcgagcact
      121 ggagaccggc cggccgttca cggagccggc gagaagcagc tgaggccgag gcggacgctc
      181 cggtgttcca gtacgtgggc gagcgcgcgg ctcgcgccga tcgcgtgttc gtatggggct
      241 tcagcttctc cggggctctc ggagtgccca gcttcgtggt gccgtcctcg gggcccggac
      301 cgcgcgccgg cctgaggccc cgacgtagga tccagccggt accctaccgt ctggagctgg
      361 accataagat ttcctctgct gcctgtggct atggattcac attgctgtcc tcgaaaacca
      421 aggatgttac gaaagtctgg ggcatgggac tcaacaaaga ttcccagctt ggatttcaca
      481 ggagccggaa ggataaaacc aggggctatg agtatgtcct ggagccctcg cctgtcccgc
      541 tgcccctgga cagacctcag gagacaaagg tgttgcaggt gtcctgtggt cgagcacact
      601 cccttgtcct gacagacaga gaaggtgtct tcagcatggg gaacaatgcc cacgggcagt
      661 gtggacggaa ggtggtggag gacgaagtat acagtgagag tcacaaagtg cacaggatgc
      721 aggacttcga gggacaggtg gtccaggttg tctgcggtca ggaccacagc ctgttcctca
      781 cagacaaagg tgaagtctat tcttgtggat ggggtgccga tggacagaca ggcctgggtc
      841 actacaacat caccagcaca cccagcaagc tgggcggaga ccttgccggg gtgactgttg
      901 tccaggttgc tacctacggt gactgctgct tggctttgtc ggccgatgga ggtgtctttg
      961 gctggggaaa ttctgagtac ctgcagctgg cctcggtcac agactccaca caggtgaatg
     1021 tccctcggtg cctgcctttc tccggagtag gcaaggtgaa gcaggtggct tgtggtggca
     1081 caggctgtgc tatactgaat gaagaaggac atgttttcgt ctggggctat ggaattcttg
     1141 ggaaaggacc aaacctctca gaaacggcgc ttccagaaat gatcccacct acactctttg
     1201 gtttgacaga gttcaaccct gaagtcaagg tttcccagat ccgatgtggg cttagccact
     1261 ttgccgcact caccaacaag ggtgagctgt ttgtgtgggg caagaacatc cgagggtgcc
     1321 ttggcattgg acgcctggaa gaccagtact tcccatggag ggtgacgatg ccaggtgagc
     1381 ctgtggacgt ggcttgtgga gtggatcaca tggtgactct agccaagtcc ttcatctgaa
     1441 cctctctctg ggcctatctc ctgctggccc ccgcctgtag ctataaggac agctatggct
     1501 tggcagaaac cagcagagtt tctgagggta cagggagaga gatccagggc ctctgtggag
     1561 cagggtgcct gctctgtgtc ctcagtggga atgttgtacg aggagttgtg gacaaggccc
     1621 tacacccgct gaggctcctg cctgctgaac tcggctcagg atggctactg ttggcttggc
     1681 atgttcctga ggagtaccag ggcatgaaga ccttgggtgc ccaggcagat tccttttcca
     1741 agtaacacat gatagcatct ggggatgtgt ctagtctgag acactatttt tagggaaagt
     1801 tcactgctca tgacacattt gataataaag tttagagaca tgacagggca ctcagaagaa
     1861 cctgtagtct cctgtcacaa gaggataaac ttgggcctca gctcagcaag agagccagct
     1921 gacttcagtg agggcctctc tgatcagctg tcaccccaga ggttccccag aacacagtcc
     1981 aggagcccag aatgccttgg cttgaactct tcatggagtg gccagtggga gccgtgcagt
     2041 atcccagctt tggaacttcc tcactccctg gctctgagca gcccagaagc ccctgaagaa
     2101 agaagttgaa ggccaaatgc ttgtgggctg agggctgtgg aatcttggct gaagggccgg
     2161 cctcagaaac tgggaaaata cttgttttta aaaagcttgt cgcttccttt cagaacagtg
     2221 tttggaaggt cttttggaat aaagtctatt ttctgccttt tt
//
