LOCUS       XM_039107619            6441 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rabenosyn, RAB effector (Rbsn),
            transcript variant X4, mRNA.
ACCESSION   XM_039107619
VERSION     XM_039107619.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107619.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6441
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6441
                     /gene="Rbsn"
                     /gene_synonym="Zfyve20"
                     /note="rabenosyn, RAB effector; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 44 ESTs, 3 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     66 samples with support for all annotated introns"
                     /db_xref="GeneID:312562"
                     /db_xref="RGD:1305397"
     CDS             258..2345
                     /gene="Rbsn"
                     /gene_synonym="Zfyve20"
                     /codon_start=1
                     /product="rabenosyn-5 isoform X3"
                     /protein_id="XP_038963547.1"
                     /db_xref="GeneID:312562"
                     /db_xref="RGD:1305397"
                     /translation="MWEPQELGAMRSHLSDFKKHRAARIDHYVIEVNKLIIRLEKLTA
                     FDRTNTETSKIRAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCM
                     ELIGLPLANKLTSASKDSLSTHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDDERI
                     RCCTHCKDTLLKREQQMDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMAASLNAGE
                     TTYSLEHANDLRVEVQKVYELIDALSKKILTLGLNQDPSPHPNTLRLQRMIRYSATLF
                     VQEKLLGLMSLPTKEQFEELKKKRKQDLEQKRTMERQAALESRRKLEERQSGLASHTA
                     NGDMRSLQGIPAPLRKAEGWLPLSEGQVQSEDPDPLLQQIYNITSFIRQAKAAGRTDE
                     VRTLQENLRQLQDEYDQQQTEKAIELSRRQAEEEELQREQLQMLRQRELEREEEQFLA
                     ASLQTRTRVLELREVLPFQLEPIRGPHTDLAYSLDEDSSPVQSSTAPDILSPGSALAP
                     IHVWSGSPALSQELLLQSTISQPSSKTSLNPFDEEDLSSPIEGAVSPAAVEAFLGPPA
                     AVTKEYNPFEEDAEEEEVAELGAGNPFTDPDSPAPNPFDEDDHPRSASPAAPGNPFEE
                     CPCTNPFEVDSDSGMEAEEHIEEELLLQQIDNIKAYIFDAKQCGRMDEVEVLTENLRE
                     LKCTLAKQKGAPN"
ORIGIN      
        1 ctctgaggaa tctcgaaggc cgggagtcgg gagctggagc tggagagtag gctgccggct
       61 gactgtcgga agtcgcaggg agagaggaag ggtgttggct tgctcggagc cgccaccgag
      121 agcgcagcgg tggctgagat cttgttcaga aggctaggaa agcaaagaac aagttgttga
      181 aacgagaagg agatgatcgt gtggagccag ggacccaagg atacgaatca ttcagctatg
      241 gaggggttga tccttacatg tgggaacctc aagagcttgg tgctatgaga agccatcttt
      301 ctgattttaa aaaacatcgt gctgcaagga ttgaccacta tgttattgaa gtcaataaat
      361 taataatcag gttggaaaag cttaccgcat ttgacagaac aaatactgag acctcaaaga
      421 ttagagcaat agaaaagtct gtggtgcctt gggtcaatga ccaggatgtt ccattctgtc
      481 cagactgtgg gaataagttc agcatccgga accgccgtca ccactgccgc ctctgtgggt
      541 ctatcatgtg caagaagtgt atggagctca ttggcctgcc cttggcaaat aagctcacca
      601 gtgccagcaa ggactccctg agcacccaca ccagccccag ccagtcacct aacagtgtcc
      661 atggctcccg ccgaggcagc atcagtagca tgagcagtgt cagctcagtc ctggacgaga
      721 aggatgatga gcgcatccgc tgctgcacgc actgcaagga cacgctgctc aagagagagc
      781 agcagatgga tgagaaggag cacacgcctg acatcgtgaa gctctacgag aaacttcgac
      841 tttgcatgga gaaagttgat cagaaagctc ctgaatacat caggatggca gcatcattaa
      901 atgctgggga gacgacctac agtctggagc acgccaacga ccttcgagtg gaagtgcaga
      961 aagtgtacga gctaatagat gctttaagta agaagatctt aaccttgggc ttgaaccaag
     1021 acccttcacc acatccaaac actcttcggc tacagagaat gatcagatac tcagctacac
     1081 tatttgtgca ggaaaagtta ttgggtttga tgtcactgcc aaccaaagaa cagtttgaag
     1141 aactaaaaaa gaaaaggaag caggacctgg agcagaagag gaccatggag cgacaggctg
     1201 ctctggagtc ccgacggaag cttgaggaaa ggcagagtgg tttggcatct catacagcca
     1261 atggggacat gaggtctctt caaggcatac ctgccccctt gcgaaaggct gagggctggc
     1321 tcccactgtc agaaggtcag gtacagagtg aagaccccga ccctctcctt cagcagatct
     1381 ataacattac atcgttcatc aggcaggcca aggctgcagg ccgcacagat gaggtgcgca
     1441 cacttcaaga gaacctgcgg cagctgcaag atgagtatga ccagcagcag actgagaagg
     1501 ccatcgaact gtcccggagg caggctgagg aggaggagct acagcgggag cagttacaga
     1561 tgctccgcca gcgggagctg gaacgagaag aagagcagtt cctggcagca tctctgcaaa
     1621 cacggactcg tgttctagaa ctccgagaag ttttaccctt ccagttggag cccatccgag
     1681 ggcctcacac tgatcttgcc tattccttag atgaggactc ctccccagtt cagagcagca
     1741 cagctcctga tatcctttca cctggctcag ctctagcacc catccatgtg tggtctgggt
     1801 ccccagccct tagccaagaa ttactccttc agagcaccat atcacagcca agtagtaaga
     1861 cctctctcaa cccgtttgat gaagaagacc tctccagccc tatagagggt gctgtcagcc
     1921 ctgctgctgt agaggctttc ctgggccctc cagctgctgt caccaaagaa tacaatcctt
     1981 ttgaggaaga tgctgaggaa gaggaggtgg cagagttggg ggcagggaat cccttcactg
     2041 acccagacag tccagcaccc aacccctttg atgaggatga ccatcccagg tctgccagtc
     2101 cagccgcccc tggaaaccct tttgaagagt gtccatgcac caaccccttt gaggtagaca
     2161 gtgatagtgg catggaggct gaggaacaca ttgaggagga gctgctcctg cagcaaattg
     2221 acaacatcaa ggcttacatc ttcgatgcca agcagtgtgg tcgaatggat gaggttgagg
     2281 ttctgacgga gaacctccgg gagctgaagt gcaccctggc taagcagaag ggggccccta
     2341 actgacagca gtgggcagga actgggcaga gtctttggta gcatgatatc aagtgggagg
     2401 aggagatggg caggcgcctg aaacgcacac aggtgggggt tggaaatagt agtctcttgc
     2461 tgtgcacttt gagacatttc cactatagtt gaacaagaac aggaaaaaaa tcggcattat
     2521 ttgctggttt ttctgtattt cttttaatga agtgttccct tttcagggga ctttatgatt
     2581 ttatttattg agatacagag ctgggccaag gtagaaatgg ctcctgggta cctctttgtc
     2641 cattttctgc tgactgttct tggtcattat gcagtattat agggaagccc ttaacagacc
     2701 ccttccacta gccaagatag gcaggggctc agcaggagtc tgtcctgact tggttgcttc
     2761 ctttcagcac ctccctgctt ggactatctc ttggacactt agggagatgc tgtgtgaagg
     2821 cagagtctaa acccagtggg caccagtgcc tctttttaca gatggcagga atgttgccag
     2881 tgttgccccc tcccagttaa aggaagtaaa gttcccaagt gtgagggtgg tggggtggtg
     2941 gtgtcagtgt gagcttgact atgagacagt agtgatcaac ttcttggtgg atgttatggt
     3001 ttgggagaac tttctacttg tgcagttgtc agcccctggg gtttgataga acgaccacta
     3061 tataggtcac attcaagggc ctgtgacttg ggaattgtga ctggttagtt tctgtggaat
     3121 attagtaggt gatggaacac ttctgagtca ggagataaat tctagtaact tccaaggccc
     3181 tcacgtcagc cttcttccat gtggttcatt ctggaaactg gtaagatgtt attttactac
     3241 ttcgagtact gaaagacaga aatatttgag gcatagcctg agatcattcc acagctctga
     3301 agtacttgaa ctcttgatag aagacagaaa gggaagttat gtagcttagt actttggttt
     3361 acaggaacag gtcagttgac agatgacctt gtaagatcct tggtgtgctc agctctgggt
     3421 catttcttta gttaatggac aataactgtc tactagtcac tttcccttta gctagctctg
     3481 ggccgtgcct tttgttcgct actggtgtgc aagctcaaat tcttctctca cattctggtg
     3541 aagatctgtc ttggtggtaa gaataccatg tgggtgcaaa gatctctatt ttggcagctt
     3601 taatcccaat tcatagtacc tgttggggct ttggctggat agaaagccca cttggagagg
     3661 aagggtaaga accctttggg gttctggaag gtaagcagcc tggcatcgta tgttacctgg
     3721 ggcaggcttc ccctctttct aaagcctagt ccccaggcat gcccagcaca tcaccctgct
     3781 tcatctgctt ctgtgtgatg gaaaaggagg cagctctaaa ataaggatga agctgaatac
     3841 tggttttcac cattactttt cctgacacag atcaggtgtt cagggtggtt caactgcaga
     3901 cattgctttt cttataagaa tggctttctt aattagctag tgactcatta aatgtactcc
     3961 tttctggaac tcactctaga tagcagtcta acagagcatg gggaaaacag atgcttttca
     4021 acagccattt cttaaatccc gattgaattt taaaccaagt gaactcagat tccagaggtt
     4081 ttactgagtt tcttattgaa ttcctctttg atcatattct gaaagtcaga gacataacaa
     4141 gagagacatg tctacccatt ggctgtatca cttcccagaa ttcctacaag tcagttggtt
     4201 tgcagagggt gtttggcctg tgagtgaacc acagtgccag cttcttacct tgggtgaata
     4261 tttcatgatt cccaaggtcc caagctccac ctcagcagtg aaggagcaca tccttgataa
     4321 ggtattggca gatcccttag gtgtaggtcc tgttcacagt ggaagggctt cttgctttgt
     4381 tcccttctaa cacactaagg aactggagcc tcactcattg cacttaccac acatcatgtc
     4441 tttgttgtca gatgttaaaa catctttcta agtcatcatg agccatgttg catagcagtg
     4501 ccatgcagtt caaattgtgg aattggcctc tggacaaggt cagactagag gagcatggtg
     4561 ttctggtaat catgatgact gtcagcaaga tggtcattga cgcacatgca ctacactggg
     4621 gccttgtatc agaggctttt attaaaaaaa tatcatttat gtgaggcttt tattaaaaaa
     4681 aataacatgt tcatggctgg gcttgtgtgt gcttaaaacg tccctccact gcctttttgt
     4741 agtgagtgtg tgtgagtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtttg
     4801 catgtgcaca tggaggccag aggacaacct tggatattag tcctaggaaa gctgtctgcc
     4861 ttcttttagg cagggtttct cattcttggc tccagctttg ccaacaggcc cgtggtatgt
     4921 tgtttgacag aggacaggtt ggacacttac aactcacttt gccatcatta tctaggtggg
     4981 tttgggttgg ctcaggaatg gtgaagaggg aagggcttag ctactatata gaccaaagag
     5041 acagcatgag caatctggaa agaagttggg tacagctagc tgggttgcta cagtgacttc
     5101 atctgggcct ggagcccgag gaggggcctt gtatccagtg cttatggtgg ggtgggtcgg
     5161 agttcactat gatggaagtc atcattgaat ctttctaaca agcagagttg tacttctggg
     5221 accctgccca ggtctgtttg atttgggaca ccaaactgtt tgtgtaagat actgggtttt
     5281 tcctgtgggt gcagtatcat ctgtgactag actttaaaac ctgcagcctc ctcagaagtc
     5341 tagcagaact ttaatcactt cagaatttta gtttagcact ttagatttta gttgtgatat
     5401 ttcttggaag ttatcagtct tcttacaagc agcaactggt ttgaataaaa aaccaataac
     5461 ctttcttgga gtcattaggg aactgatttg cagggctcac tttcctccca gcacctgcag
     5521 tggtgagttc agagtaagcc aagacctgat agctacagca gaagccatga ctagtaggaa
     5581 aagcaggagt aactttgggt tttgttattg ggctgtgact gaggataggg ccttgaacat
     5641 actaggcata tgatctacta ctgagttata ttgctagctt tttattcttc agacagggtt
     5701 gagtttgaat tcagtgtaac ccatgcgggc cttgaacttg tgatccttct gcttcagtct
     5761 ccagagcttc tggaatcaca tgtttgcatg accaagactg gcacatagcc ttgacgagtc
     5821 ctggaggctg actgtccact aggcacagtg agggcctgct tcctacaaag gcggttcctt
     5881 gttggttcta atggtgagca ctgagaaggc tcctcctata gccggggcag aagaattttg
     5941 taacaaaagt atcgtagtaa agccttctac aaatgaagag acttcaccaa acctacttat
     6001 ttgggcaaac atattgcccc cacccagttt ccttttgcct tctctgtctg ccttctttgt
     6061 ctgagggaga agtaggaaat taagaaacat attcaggtca tggcttgaga cagcctaaga
     6121 tcatagaatc caaccctctt taccttatat tcccctaggg ctccaggata gatagtaaga
     6181 ggatcacagc tgcaagagac tgcagaggag gacccaggaa ctccaagctt ctgatatcta
     6241 ttcctacagc aaacagtcct cacactagag acttcagcac cttagtttct actccacaca
     6301 tagccagtga ctcaaaatgg ttagaagcat tctaaaaggt aagcaagtga cactagactc
     6361 atgccggaat taccagacag taaatttaac tgcaggttat gcattacaga gactaatatg
     6421 aataaacaat gtgtaagaac a
//
