LOCUS       NM_001173426            1903 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Rattus norvegicus RNA binding protein, mRNA processing factor 2
            (Rbpms2), mRNA.
ACCESSION   NM_001173426 XM_001076681 XM_578738
VERSION     NM_001173426.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1903)
  AUTHORS   Yang,Y., Lee,G.C., Nakagaki-Silva,E., Huang,Y., Peacey,M.,
            Partridge,R., Gooding,C. and Smith,C.W.J.
  TITLE     Cell-type specific regulator RBPMS switches alternative splicing
            via higher-order oligomerization and heterotypic interactions with
            other splicing regulators
  JOURNAL   Nucleic Acids Res 51 (18), 9961-9982 (2023)
   PUBMED   37548402
REFERENCE   2  (bases 1 to 1903)
  AUTHORS   Nakagaki-Silva,E.E., Gooding,C., Llorian,M., Jacob,A.G.,
            Richards,F., Buckroyd,A., Sinha,S. and Smith,C.W.J.
  TITLE     Identification of RBPMS as a mammalian smooth muscle master
            splicing regulator via proximity of its gene with super-enhancers
  JOURNAL   Elife 8, e46327 (2019)
   PUBMED   31283468
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1903)
  AUTHORS   Sagnol,S., Yang,Y., Bessin,Y., Allemand,F., Hapkova,I.,
            Notarnicola,C., Guichou,J.F., Faure,S., Labesse,G. and de Santa
            Barbara,P.
  TITLE     Homodimerization of RBPMS2 through a new RRM-interaction motif is
            necessary to control smooth muscle plasticity
  JOURNAL   Nucleic Acids Res 42 (15), 10173-10184 (2014)
   PUBMED   25064856
REFERENCE   4  (bases 1 to 1903)
  AUTHORS   Piri,N., Kwong,J.M., Song,M. and Caprioli,J.
  TITLE     Expression of hermes gene is restricted to the ganglion cells in
            the retina
  JOURNAL   Neurosci Lett 405 (1-2), 40-45 (2006)
   PUBMED   16870336
  REMARK    GeneRIF: specific expression of hermes in retinal ganglion cells
            qualifies this gene as a potential RGC marker in the retina.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC169038.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_578738.3, XM_001076681.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169038.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1903
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..1903
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /note="RNA binding protein, mRNA processing factor 2"
                     /db_xref="GeneID:503214"
                     /db_xref="RGD:1561222"
     exon            1..22
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            23..231
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..777
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /note="RNA binding protein with multiple splicing 2"
                     /codon_start=1
                     /product="RNA binding protein, mRNA processing factor 2"
                     /protein_id="NP_001166897.1"
                     /db_xref="GeneID:503214"
                     /db_xref="RGD:1561222"
                     /translation="MSNLKPDVEHCTGAGTGTGTGPSGPLEEEVRTLFVSGLPVDIKP
                     RELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLR
                     LEFAKANTKMAKSKLIATPNPTSVHPALGAHLIARDPYDLMGAALIPASPEAWAPYPL
                     YTTELTPAISHTTFTYPAATAAAAAALHAQVRWYPSSDTAQQGWKYRQFC"
     exon            232..309
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            310..348
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            349..411
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            412..562
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            563..714
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            715..784
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
     exon            785..1872
                     /gene="Rbpms2"
                     /gene_synonym="RGD1561222"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaacgaacg gaacctttct agcctgacgc ggcagcagcc ggtttcctca cgagcccgca
       61 ctctcctcag gggcgcacgg ctcgccgtgc ccctgcccac cacgggaccg accgtccctc
      121 tcccctctcc gcgtccccct caccatgagc aacctgaagc cggacgtcga gcactgcacg
      181 ggcgcgggca ccggcaccgg cacgggcccc agcggcccgc tggaggagga ggtccggaca
      241 ctgtttgtca gtggcctccc tgtggatatt aagcctagag aactctacct gcttttccgg
      301 ccgttcaagg gctacgaagg gtccttgatc aagctcactt caagacagcc tgttggtttt
      361 gtgatctttg acagccgggc aggagcagaa gcagccaaaa acgcattgaa tggtattcgc
      421 tttgatccgg agaacccaca gaccctgagg ctagagtttg caaaagccaa caccaagatg
      481 gccaagagca aactgatagc aacaccaaac cccaccagcg tccaccctgc cctaggagca
      541 cacttgatcg ctcgggaccc ttatgacctg atgggggccg ctctgattcc tgcgtcccca
      601 gaggcctggg ccccttaccc tctctacacc acagagctga ccccagccat ttcacatact
      661 acgttcacct acccagctgc cactgctgct gccgccgccg ccctgcatgc tcaggtgcgc
      721 tggtacccct cctcggacac cgctcagcaa gggtggaaat atcgccagtt ctgttagctc
      781 ctcagtcttg tcaccctgga gttggtcctg ggttgtatgg ggccagaaca gggctctgcc
      841 ctcactgcca cccgaggcct gtgcggacgg acctgctgct tccctctaga cactgtgaat
      901 ctgaagcctg actctggatg gctcctgttt tcttcctcag ttctccaagg ccttcgggag
      961 gatcagaggc cttggatacc taggtccagc ttgcaggcct cactgggacc cagcgcagcc
     1021 tgacctcctg ctcaaacttg tacctgtagc tccccatcaa ggaaaaggga cgtttaattt
     1081 tgcatgttta tgaattgtga cacttgtgca tatgtgtgta cggtttgttc ccacactgtc
     1141 gccgtagcaa caggtcttgg caacggaggc tggttcagcc tactcctctc cactcccgac
     1201 tcctgcaccc accctgcttc gggggggcct gaccctgtgg tcacttctgc cttgggggcc
     1261 ccagctccta atgcagatgc acacgcacac gcacgcacgc acacacatgc agactccatt
     1321 ctcatccagc agtagatcca cagcctctga gttccatgtc caatcagagt cctgcatcgt
     1381 ctccttctcc aggccgacaa gtctaagaag ccttccttgc gattgcctcc cccatgtacc
     1441 ccactctgcc actgcccctc attcttcctg aacttcgaaa ccaaccaaaa cgtgaaaagt
     1501 atttttgtac cctgtgtaac aaaatattta tggatcataa agggtttttc atgtgtttac
     1561 cattaattat tgaagagacc ttgttcagcc tgtcagataa gtttaatgtt tagtttgaag
     1621 catgaagaag aaaaggggtt tccgttcttc agccgtcagc ctttgtgtcg ggtgttggtt
     1681 taagaatgag atgaaggata aattgtgcaa ttttgtttta gttgacgagc atgtctgctt
     1741 cacctttaac ctcagcttgg atgtctggct acttccgaca atgacgtctg gaggtggctc
     1801 ttgtaattgg tgaccctgtg agaatgtgaa actggatcat aaatgaaatg caaaataaaa
     1861 acctgaagtg acaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
