LOCUS       NM_001108604            2592 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus recombination signal binding protein for
            immunoglobulin kappa J region-like (Rbpjl), mRNA.
ACCESSION   NM_001108604 XM_001071311 XM_342576
VERSION     NM_001108604.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Hale MA, Swift GH, Hoang CQ, Deering TG, Masui T, Lee YK, Xue J and
            MacDonald RJ.
  TITLE     The nuclear hormone receptor family member NR5A2 controls aspects
            of multipotent progenitor cell formation and acinar differentiation
            during pancreatic organogenesis
  JOURNAL   Development 141 (16), 3123-3133 (2014)
   PUBMED   25063451
REFERENCE   2  (bases 1 to 2592)
  AUTHORS   Masui T, Long Q, Beres TM, Magnuson MA and MacDonald RJ.
  TITLE     Early pancreatic development requires the vertebrate Suppressor of
            Hairless (RBPJ) in the PTF1 bHLH complex
  JOURNAL   Genes Dev 21 (20), 2629-2643 (2007)
   PUBMED   17938243
REFERENCE   3  (bases 1 to 2592)
  AUTHORS   Minoguchi S, Ikeda T, Itohara S, Kaneko T, Okaichi H and Honjo T.
  TITLE     Studies on the cell-type specific expression of RBP-L, a RBP-J
            family member, by replacement insertion of beta-galactosidase
  JOURNAL   J Biochem 126 (4), 738-747 (1999)
   PUBMED   10502683
REFERENCE   4  (bases 1 to 2592)
  AUTHORS   Minoguchi S, Taniguchi Y, Kato H, Okazaki T, Strobl LJ,
            Zimber-Strobl U, Bornkamm GW and Honjo T.
  TITLE     RBP-L, a transcription factor related to RBP-Jkappa
  JOURNAL   Mol Cell Biol 17 (5), 2679-2687 (1997)
   PUBMED   9111338
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474005.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342576.3, XM_001071311.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMN12840122 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2592
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /note="recombination signal binding protein for
                     immunoglobulin kappa J region-like"
                     /db_xref="GeneID:362268"
                     /db_xref="RGD:1304786"
     exon            1..175
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1701
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /codon_start=1
                     /product="recombining binding protein suppressor of
                     hairless-like protein"
                     /protein_id="NP_001102074.1"
                     /db_xref="GeneID:362268"
                     /db_xref="RGD:1304786"
                     /translation="MNPGETTDPSVPPGPLTHLSLPDSSEVRLQNDGPSLLGSWTRSP
                     PEHATILREGVRTCLQQRCEQTVWILHAKVAQKSYGTEKRFFCPPPCVYLAGPGWRVK
                     PMQDQVHQSADTGPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKTLFISDAD
                     KRKHFRLVLRLVQRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNR
                     LRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQGDFPPQEGYIRYGSLVQLV
                     CTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGDTPGGAGTYLCLSTEKV
                     VRFQASLCPKEANRALLNDSSCWTIIGTESVEFSFSTSLACTPEPVTPVPHISTLELS
                     GGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCVVPDVAAFGSDWRWLRTP
                     ITVPVSLLRADALFYPSAFSFTYTPEYSTRPRPPNAQEPAPDADALLESIHHEFTRTN
                     FHLFCPT"
     exon            176..278
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            279..404
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            405..475
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            476..591
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            592..766
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            767..904
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1014
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1167
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1323
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1427
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..2592
                     /gene="Rbpjl"
                     /gene_synonym="Rbpsuhl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggagtccc gggaccttga agattaggct tggacgcgat aaatccagag cgaggatcgg
       61 ctcggggctt attggtgtga acggtatcga agacagtggc agtagacgtg cccagagggc
      121 agcgagagag cggcctgggc ctcgacggcg gccatgaacc ccggggagac aacagacccc
      181 tcggtgcccc cgggcccttt gactcacctg agcctgccgg acagctcaga ggtgcggcta
      241 cagaacgacg ggcccagcct cctgggtagt tggaccaggt cacccccaga gcacgccacc
      301 atcctaaggg aaggcgtgcg tacatgcctg cagcaaagat gtgagcagac tgtgtggatc
      361 ctgcatgcca aggtggctca gaaatcctat ggaactgaga agcggttctt ttgccctccg
      421 ccctgtgtct acctcgccgg ccctggctgg agggtgaagc caatgcaaga ccaagtccac
      481 cagtctgcgg acaccgggcc caccgtctgc ggttacatgg gactggacgg cgcgtccggc
      541 agcgctcccg agacccagaa gttgaacttc gaagagcagc cagactccag ggaatttggt
      601 tgcgccaaga ccctgttcat ctccgacgcc gacaagagga agcacttccg gctggtgctg
      661 cggctggtgc agaggggagg ccgggagctg ggcacgttcc acagtcgcct catcaaggtg
      721 atctccaagc cttcacagaa gaagcagtcg ctgaaaaaca cagacctgtg tatctcctcg
      781 ggctcaaagg tctccctttt caatcgcctg cgctcccaga cagtgtccac gcgctacctc
      841 tctgtggaag atggggcctt tgtggccagc gcaagacagt gggctgcctt caccctccac
      901 ctggctgatg ggcactgctc ccaaggggac ttcccacccc aggaaggtta catccgctat
      961 ggttccctgg tgcagcttgt ctgcactgtc acgggcatca cacttcctcc tatgatcatc
     1021 cgaaaagtgg ccaagcagtg tgccctcctt gacgtggacg aacccatatc ccagctgcac
     1081 aagtgcgcgt tccagttccc aggcgacacc ccaggagggg ccggcaccta cttatgcctc
     1141 tccacagaga aggtggtgcg attccaggcg tccctctgcc ccaaggaggc caacagggca
     1201 ctgctcaacg acagctcttg ctggaccatc attggcacgg agtcggtgga gttctccttc
     1261 agcaccagcc tggcctgtac tccggagcct gtcactccag tgcctcatat cagcactctg
     1321 gagctgagcg gcggaggtga tgtggccacg ctggagctgc acggagaaaa tttccacgct
     1381 gggctcaagg tgtggttcgg agatgtggag gcagaaacca tgtacaggag ccctcgttcc
     1441 ttggtgtgcg tagtgccaga tgtggcggcc ttcggcagcg actggcgttg gctgcgcact
     1501 cccatcacgg tgcccgtgag cctgctgcgc gctgacgcgc tcttctaccc cagcgctttc
     1561 tccttcacct ataccccgga atacagcacg cggccacggc cacccaacgc ccaagagcct
     1621 gcccctgacg cagatgcgct tctggagagc atccaccatg agttcacacg caccaacttc
     1681 cacctcttct gccccaccta gtcagtgcca ctgaagctgg ctccagaccg ctgcccccag
     1741 ctgtccctca gggcgtcctt tcccttacgc taccaaagag caggagggat gacgatatct
     1801 cgcctgacct caggccactt gctgtcctta gacatacagt aactgtcaat catgagtaat
     1861 gttctttggt tctttttttt tttttttttt ttttttgagc tggggaccga agccagggcc
     1921 ttgcgcttcc tagccaagcg ctctaccact gagctaaatc cccaacccat gagtaatgtt
     1981 ctaatgtctt cacggtgtgg cgtgcttcct gtttttgtaa acctgtaggc ttattcttct
     2041 gtctttgtct ctttctgcct cttcatgtgt cggcgaccaa ttttgagtat ggaagcctag
     2101 gggatttgtt ctccaggcac ctgtgtcccc acttgaaaac aagttacttg aagtaaaact
     2161 aggcttgggc ttggtcccgt gagatccctc ttagagctag gcatgtgtct gcccgtggtg
     2221 acgcctggct ttggtctctg atcaggcaga ggctgaggac ggtggtcagg tttgctcttt
     2281 ttcactgtcc cacacagcta cttctctcag gaccaatagg aagagcctga ggatatcctt
     2341 ctgtatccag gtataagtga atgagaaaac actgtgctgg ggggagggat ggtcaggggt
     2401 aagggaggga gagggctgag tgctcccagg attctgacca agtcagagcc tgatggagat
     2461 gctgccattt ttatgactct ctgtagggaa gaaatggggt tccaaggcca caaatatcct
     2521 aagcctagag gccaccttgc caccctggca gccagcaact agctatcctc ccgtgccaag
     2581 tgtcttggtt ag
//
