LOCUS       XM_039105396            4310 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus RNA binding motif, single stranded
            interacting protein 1 (Rbms1), transcript variant X9, mRNA.
ACCESSION   XM_039105396
VERSION     XM_039105396.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4310
                     /gene="Rbms1"
                     /note="RNA binding motif, single stranded interacting
                     protein 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 48 ESTs, 9 long SRA reads,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:362138"
                     /db_xref="RGD:1307777"
     CDS             168..1376
                     /gene="Rbms1"
                     /codon_start=1
                     /product="RNA-binding motif, single-stranded-interacting
                     protein 1 isoform X9"
                     /protein_id="XP_038961324.1"
                     /db_xref="GeneID:362138"
                     /db_xref="RGD:1307777"
                     /translation="MIMLLLAPQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSK
                     TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA
                     VSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSS
                     GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPN
                     KYIPNGRPWPREGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPV
                     SAYQVAKETREKKYRGPALKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS
                     PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQQVTVETSND
                     HSPYTFPPNK"
ORIGIN      
        1 gtacagtttg ctgtgcactc tcaaagttgt cattcaccta attgaatttt actcatggaa
       61 aggaggtggt tattccagat gctgtagcag agaggagggt gcaattagca gttttccagc
      121 cttgctttcc cgagctgttg ttcttacccc agttcacaca tggacagatg attatgctac
      181 ttctagctcc ccagtctctg gtcccagcgc accccatggc ccctcccagt cccagcacca
      241 ccagcagtaa taacaacagt agcagcagta gcaactcagg atgggatcag ctgagtaaga
      301 cgaacctcta catccgaggc ctgcccccca acaccactga tcaagacctg gtgaagctct
      361 gtcaaccata cgggaagatt gtctccacga aggcgatttt ggataaggca accaacaagt
      421 gcaaaggtta tggatttgtt gactttgaca gtcctgcagc agcccagaaa gctgtctccg
      481 ccctgaaggc gagtggagtc caggctcaga tggcaaagca acaggaacaa gatcctacca
      541 acctgtacat ttctaacctg ccactgtcca tggatgaaca agaacttgaa aatatgctca
      601 aaccctttgg acaagttatt tctacaaggg tcctgcgtga ttccagtggt accagccgtg
      661 gtgttggctt tgccaggatg gaatcaacgg aaaaatgcga agctgtaatt ggtcatttta
      721 atggaaaatt catcaagacc ccaccaggag tttctgctcc tacagaacct ttactgtgca
      781 agtttgcgga tggaggacag aagaagagac agaacccaaa caagtacatc cctaatgggc
      841 ggccatggcc cagagaagga gaggccggaa tgacactcac ttacgacccg actacagctg
      901 ctctacacaa cggattttat ccttcaccat acagtattgc cacaaaccga atgatcactc
      961 aaacttctct tacaccctat attgcatctc ctgtatctgc ctaccaggtg gcaaaggaaa
     1021 ccagagagaa aaagtatcgg ggccctgctc tcaaggtgca gagtccttcc tggatgcagc
     1081 ctcaaccata cattctgcag catcctggtg ccgtgttaac tccctccatg gaacacacca
     1141 tgtcactaca acctgcttct atgatcagcc ctctggccca gcagatgagt cacctgtcac
     1201 taggcagcac cggaacatac atgcctgcaa cgtcagccat gcaaggagcc tacttaccac
     1261 agtacacaca catgcagact gcgacggttc ccgttgagga agcaagtggc cagcagcagg
     1321 tgactgtgga gacgtctaat gaccattctc catatacctt tccacccaat aagtaactgt
     1381 gagatgtacc gaagggagtt cttacatgaa gaagggtgtg aaggctgaac aatcatggat
     1441 ttttctgatc aattgtgctt taggaaatta ttgacagttt tgcacaggtt cttgaaaacg
     1501 ttatttataa tgaaatcaac taaaactatt tttgctataa gttctataag gtgcataaaa
     1561 cccttaaatt catctagtag ctgttcccct gaacaggttt attttagtaa aaaacaaaaa
     1621 caaaacggaa aaaaaaaagg aaaaaaaaag tcaaaagatt tttatcaaat ataatgatgc
     1681 aaaaaaaaaa aaaagaaaaa aaaaagagag aaaaagaaaa cttcaatttt ctgggtatgc
     1741 acaaagacca cgaagactta tccaagtgca tgaccggatt tttgcagttt tgttcatttt
     1801 gtgtttaatt tgtccccttt tttttcagct gtatgaaatg ggctttctga agtcttcact
     1861 tgtccaactt tacccatggt gttctgtgct tgcaagggtt gctgtaactc agtgttggcc
     1921 tcactgtctt tacttagcct tccattttcc tttggatgta gtgtgaagtg tcttatcctt
     1981 ttctatgaat tccaatttgc cttaaactct tttgatgctg tagctgtttc agtaaagtta
     2041 gttcaaccta atgatgtaga atgctttgac caaatgggct ggtctattac gccttgtaaa
     2101 gcagcagcat agggctttta aaaggtagtc aataaaagtt gctgaaattt tggctttttt
     2161 aaatatgtag taggtgtttt taatgatttt tttcacataa acgtgtaagg tagtgaagtg
     2221 cgaggaggga aaactgtttt gtgtgaaaca cattttccga ccgggggact tttaataggg
     2281 taaattgttt gtaaggctgt gcactgacag tttcctctga tagtgtgact ggtttaagat
     2341 atctgctgta tgatgcaatg taaagtcttt tttgcctttt tttcaggaag aaaaaaaaac
     2401 agcttaacga tgttctagat ttagtgtagg tagctctggg gctggggggc gggggggcgg
     2461 gggaggggag tcactgaatg ttttgtcctt tatactaacg atagtgcttt agaatgagaa
     2521 tcacacactt gagatctggc aaaccgaggg gggaggcggg gggaatgttg ctgttgaaac
     2581 taaatggcaa aagctaaaag ctaaggattt ctcttcaaac ctaagctgag ataatgaaca
     2641 gaagcaaaat gattggctac tagctcgctc tctcagtctc tctctctctc tctctctctc
     2701 tctctctctc tctctctctg tctctctatc tctcactctc tgtctctctc tgtctcttct
     2761 cctcctcctc ctccctcctc ctcctccttc tcctctctct ctctctctct ctctctctct
     2821 ctctctctct ctctctctct ctctctctct ctctctctca ttccctatta ggtaaatttg
     2881 aaaatctaaa aatgacttgg cacttttaaa aggtaacttc accaaagacc gacgagccag
     2941 tagccagcag ctccaccttg tctcagcgtc atatcttgtc tgccctttct ttttgccgga
     3001 ccagtttgcg gttaggagaa tgtgcctttt ttgtaacttt gcattaggtt ttataatttt
     3061 aactgatgta cggactcaca gagacaaatt aaaaacaaaa aaaaaaaaca aaacaaaaca
     3121 aaaaaagcac gaaggaagat ttgaatccag gcagtgccgc tctctgatgt catccactac
     3181 aggcgttcac gtgtaaagaa aaaccaactt tgaaactatg aaattcctga ttcataaata
     3241 cagttatttc tactttagta catgcaagat aattcactgt tattaacact cttttattaa
     3301 ggcagttgca tacgttttaa aagcaatggt aaattaagtt gtcttccaaa actgtgtact
     3361 tgtctggtca gctgtatatg atcagttatc tacctcagag gctatttttc ttttgtgctg
     3421 ggacaggttg ctggccctcc ctgtttccac cgaccaaatc ctcccagctc tggagttagg
     3481 gctgggcatt tatttctttt gagtgttttt tagttcttaa atttttattg cttgtatttg
     3541 atgatagatg tcagtgacat ttcatagttt caaaagtcct tgctgctctg aaagtgtaga
     3601 ttctagtgaa aattacatag tcataagaga aatgtggttt ttttgttttt ggtttttttc
     3661 ttgtttcttt tttccttttt ttcttttttt ctttttcttt tctttttttc tttttttaaa
     3721 gaagttgtgg tattattggt tctatgctcc ctcaaacatt ctgctttgtg aagtccagac
     3781 tgaaggcagc accctccatg tactgagtat gtttgtcagc ccggggcgct cactacttga
     3841 tattttttcc attagttaag acagaaagtt gttagctcag tcagtggggg aggggagatc
     3901 tgctgctagg tctgaactaa gtgccatact cgtctgggtc agatttggga aacaacctct
     3961 gtacatatga aagaagaaaa aaaagtcagt taaacatcac atagtagaca gccattaaat
     4021 tataaaaaaa attaatttat gaagaaagac cttttgtaca gattgaaaaa aaagattttc
     4081 atagagatat ctatatgatc aagagagtta attttttatt tttgttctgg tagtgctaca
     4141 ttcttgccag tggtgactta tttaccggtt caagatgact ctgtagtttt ctttcctagg
     4201 acttgttaaa acgccaaaag acatttctga actgtacatt tgatcagatt gttagctttt
     4261 tctgttttat ttcttttgag aacctttgaa taaaaacatc tgaaactttc
//
