LOCUS       NM_001108186            3721 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 6 (Rbm6), mRNA.
ACCESSION   NM_001108186 XM_001073958 XM_236624
VERSION     NM_001108186.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3721)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 3721)
  AUTHORS   Sutherland HG, Mumford GK, Newton K, Ford LV, Farrall R, Dellaire
            G, Caceres JF and Bickmore WA.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_236624.4, XM_001073958.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..3721
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /note="RNA binding motif protein 6"
                     /db_xref="GeneID:315997"
                     /db_xref="RGD:1560367"
     exon            1..173
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            174..284
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     CDS             241..3600
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /codon_start=1
                     /product="RNA-binding protein 6"
                     /protein_id="NP_001101656.1"
                     /db_xref="GeneID:315997"
                     /db_xref="RGD:1560367"
                     /translation="MWGDSRSANRTGPFRGSQEERFAPGWNRDYPPPPLKSHAQERHP
                     GNFPGRDSLPFDFQGHSGPPFANVEEHSFSYGARDGPHADYQGGEGPGHDFRGGDFSS
                     SDFQSRDSAQLDFRNRDIHSGDFRDREGPPMDYRGGDGAPIDYRGRETPHINYRDRDS
                     HTADFRSRDAPPSDFRGRGAYDLDFRGRDGSHADFRGRDLSDLDFRSRDQSRSDFRNR
                     EVSDLDFRDKDGAQVDFRGRGSATTDLDFRNRDAPHSDFRGRHRSRTYQDFRGREVGP
                     CMEFKDREMPPVDPKVLDYIQPPAQEREHSGMNMNKREESTHDHTVERPAFGVQKGEF
                     EHSETREGETQSGTFEHESQSDFQNSQSPVQDQDKPKLSAGEQQSSDAGLFKEEGDLD
                     FLGRQDTDYRSMEYCDVDHRLPGSQIFGYGQSKSFPQGKMSRDAQQDLQDQDYRTGPS
                     EEKPNRLIRLNGVPENATKEEILNAFRTSDGLPVKELQLKEYNTGYDYGYVCVEFSLL
                     EDAIGCMEANQGTLMIHDKEVTLEYVPSPDFWYCKRCKASTGGHQSCCSYCKGPKEEV
                     KQELVSYPQPQKTSIPVPSEKQPNQPRPVDKEHELRKREEGQESRLGHQKRETERYFP
                     HSRREGLTFRRDREKESWSGETRQDGESKTIMLKRIYRSTPPEVIVEVLEPYVHLTTA
                     NVRIIKNRTGPMGHTYGFIDLDSHAEALRVVKILQNLDPPFSIDGKMVAVNLATGKRR
                     NDSGDHSDHMHYYQGKKYFRDRRGGNRNSDWSSDTNRQGQQSSSDCYIYDSATGYYYD
                     PLAGTYYDPNTQQEVYVPQDPESPEEEEIKEKKSTSQGKSNSKKETSKRDGKEKKDRG
                     VTKFQESTSEGKPPPEDVFKKPLPPTVKKEESPPPPKVVNPLIGLLGEYGGDSDYEEE
                     EEEEQAPPVQPRAAQPQPREELTKKENEEDKLTDWNKLACLLCRRQFPNKEVLTKHQQ
                     LSDLHKQNLEIHRKIKQSEQELAYLERREREGRFKEKGSDRREKLQSFDSPERKRIKY
                     SRETDSDRNPVDKEDTDTSSKGGCTQQATGWRKGAGLGYSHPGLGSSEEIEGRMRGSG
                     GAPGRTSKRQSNETYRDAVRRVMFARYKELD"
     exon            285..1563
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..1653
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1723
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1724..1797
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1798..1872
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1873..1933
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2200
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2361
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2362..2459
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2460..2502
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..2584
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2585..2670
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2671..2817
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2818..2913
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            2914..3174
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            3175..3249
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            3250..3347
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            3348..3477
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
     exon            3478..3721
                     /gene="Rbm6"
                     /gene_synonym="RGD1560367"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgggatttg cgcccgtact tcatctcccg gcgggcccag cgctgaaggc ggtggcgcga
       61 cgcctttgtg gaagccggag cccaccggga ggaagttccg gtctccggga cgctgggtcc
      121 gtggcggccg ctgaggagga ggaggagcgg gccgcggggg ctacgctgcc ttggtactac
      181 cctgctagag tttggtagga aaaatatcta cttactgaag ctttcttgac atagaaagag
      241 atgtgggggg attctcgatc tgctaacaga acaggacctt ttcgtgggag ccaagaagaa
      301 aggtttgctc ccgggtggaa cagggactat cctcctcctc cccttaagag ccatgctcaa
      361 gagagacacc cgggcaactt tcctggcaga gattcacttc cctttgattt ccaggggcat
      421 tcaggacctc cctttgcaaa tgtagaggag cattctttca gctatggagc tagagatgga
      481 ccacacgctg actatcaagg aggggagggg cctggacacg atttcagagg gggagatttt
      541 tcatcttcgg atttccagag cagagattca gcacagttgg acttcaggaa tagggacata
      601 cattctgggg attttcggga tagagaagga ccacctatgg actacagggg tggagatggt
      661 gctcctatag attatagagg tagggagaca cctcatataa attacagaga cagggactct
      721 catactgctg acttcagaag tagagatgct cctccatctg actttagggg gcggggcgct
      781 tatgatttag attttagagg ccgagatgga tcccatgcag attttagggg aagagattta
      841 tcagatttgg attttagatc cagagatcag tctcgttctg attttaggaa cagggaagta
      901 tctgacttgg acttcaggga taaagatgga gcacaggtgg acttcagagg ccgaggttcg
      961 gctactactg acttagactt taggaacagg gatgcgccac actcagactt cagaggtaga
     1021 catcgttcta ggacttacca agattttagg ggcagagagg taggaccttg tatggaattt
     1081 aaagatagag aaatgcctcc tgtggatcca aaagttttgg attacattca gcctcctgca
     1141 caagagagag aacattctgg tatgaatatg aacaagagag aagaatccac acatgaccat
     1201 acagtagaaa gacccgcttt tggtgttcag aagggagaat ttgagcattc agaaacaaga
     1261 gaaggagaaa cacaaagtgg aacttttgaa catgaatctc aatcagactt tcaaaacagc
     1321 caaagtccag tgcaagacca agataagcca aagctttctg caggtgaaca acagagttca
     1381 gatgctggtc tgtttaaaga agaaggtgat ttggactttc ttggccgaca agacacagat
     1441 tacagaagca tggagtactg tgatgtggat cacaggttgc caggaagcca gatttttggc
     1501 tatggccaga gcaagtcttt tcctcagggc aaaatgtcca gagatgccca acaagacctt
     1561 caggatcaag attataggac tggcccaagt gaggagaaac ctaacaggct tattcgatta
     1621 aatggggtgc cagaaaatgc cacaaaagaa gagattctta acgcctttcg gacgtctgat
     1681 ggcttacctg taaaggagtt gcagttgaag gagtataaca caggttacga ctatggctat
     1741 gtctgcgtgg aattttcact cttggaagat gccatcggat gcatggaggc caaccaggga
     1801 actctaatga tccatgacaa agaagtcact cttgaatatg taccaagtcc agatttttgg
     1861 tactgcaaaa gatgtaaggc cagcactggt gggcatcagt cttgttgttc atactgtaag
     1921 ggcccaaagg aagaagtcaa gcaagaacta gtatcctatc ctcaacctca gaaaacatcc
     1981 attccagtac cctcagaaaa acagcccaac cagccacgac ctgttgataa ggagcatgaa
     2041 ctcaggaagc gggaggaagg ccaagagtcg agattgggac atcagaagag agagacagaa
     2101 agatacttcc ctcactctcg aagggaagga ctcactttcc gaagagaccg agaaaaggag
     2161 tcatggtctg gagagactcg ccaggatgga gagagcaaaa caattatgct aaaacgtatc
     2221 tatcgttcta ctccacccga agtgatagtt gaagtgctgg agccctacgt gcatctcact
     2281 actgccaatg tccgtatcat caagaacaga actggcccta tgggtcacac ttatggtttt
     2341 atagacctcg actcacatgc agaagctctt cgagtagtga agattttgca gaacctcgat
     2401 ccaccgttta gcattgatgg gaagatggta gctgtaaact tggccactgg aaaacgaaga
     2461 aatgattccg gggaccactc tgaccacatg cattattatc agggtaaaaa atatttccga
     2521 gatagaagag gaggaaatag aaattcagat tggtcctcag atacaaatcg acaagggcag
     2581 cagtcatcat ctgactgcta catatatgat tctgctactg gctactatta tgaccccttg
     2641 gcaggaactt actatgaccc caacacccag caagaagtct atgtgcccca ggaccctgag
     2701 tcacctgagg aagaagagat caaggaaaag aaatctacca gtcaaggaaa gtcaaatagc
     2761 aagaaggaaa catctaaaag agatggcaag gagaaaaaag acagaggagt gacaaagttt
     2821 caagaaagta ccagtgaggg gaagcctccc ccagaagatg tttttaagaa gcccctgcct
     2881 cctactgtga aaaaggaaga gagtcctcct cctcctaagg tggtaaatcc attaattggt
     2941 ctcctgggtg aatatggagg agacagtgac tatgaggaag aagaggaaga ggagcaggcc
     3001 cctcctgtgc agcctcgagc agcacagcct cagcctcgag aggagctgac caagaaagag
     3061 aatgaagaag acaaactcac agactggaat aaactggctt gtctgctctg cagaaggcag
     3121 tttcccaata aagaagttct tacaaagcat cagcaactct cagacctgca caagcaaaac
     3181 ctggaaattc accggaaaat aaaacaatca gagcaagagc tagcctatct ggagaggaga
     3241 gaacgggagg gaaggtttaa agaaaaagga agtgaccgaa gggaaaaact acagtctttt
     3301 gattctccag aaaggaaacg gattaaatac tccagggaaa cagacagtga tcgaaaccct
     3361 gttgataaag aagacactga cactagtagc aaaggaggct gcacccagca ggctactggc
     3421 tggaggaaag gggcaggcct gggatatagc catcctggat tgggttcatc agaggagatt
     3481 gaagggcgga tgagggggtc tgggggtgcc ccaggaagaa ccagcaagag acagtctaat
     3541 gaaacttaca gagatgctgt tcgaagagtt atgtttgctc gatacaaaga actcgattaa
     3601 gagtggaaat accccacagg atacaatttc ctctttgttt tgtttgtcca tctctccttt
     3661 tgttttgtta ctgttcttgc tgctagaact tttttaaata aacttttttc aatgtgaata
     3721 a
//
