LOCUS       NM_001005882            2369 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 47 (Rbm47), mRNA.
ACCESSION   NM_001005882 XM_223403
VERSION     NM_001005882.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2369)
  AUTHORS   Fossat,N., Tourle,K., Radziewic,T., Barratt,K., Liebhold,D.,
            Studdert,J.B., Power,M., Jones,V., Loebel,D.A. and Tam,P.P.
  TITLE     C to U RNA editing mediated by APOBEC1 requires RNA-binding protein
            RBM47
  JOURNAL   EMBO Rep 15 (8), 903-910 (2014)
   PUBMED   24916387
REFERENCE   2  (bases 1 to 2369)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
REFERENCE   3  (bases 1 to 2369)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 2369)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081995.1.
            
            On Oct 22, 2004 this sequence version replaced XM_223403.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081995.1, AY724525.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2369
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..2369
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /note="RNA binding motif protein 47"
                     /db_xref="GeneID:305340"
                     /db_xref="RGD:1359713"
     exon            1..117
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /inference="alignment:Splign:2.1.0"
     exon            118..1277
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /inference="alignment:Splign:2.1.0"
     CDS             149..1921
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /note="hypothetical RNA binding protein RGD1359713"
                     /codon_start=1
                     /product="RNA-binding protein 47"
                     /protein_id="NP_001005882.1"
                     /db_xref="GeneID:305340"
                     /db_xref="RGD:1359713"
                     /translation="MTAEDSTTAMNSDPTVGSSTKVPEGVAGAPNEAALLALMERTGY
                     NMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRL
                     MMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPK
                     MKKRGEILEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR
                     IQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSFGQFNPGCVER
                     VKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGG
                     GGSAEAVAQQPSYVYSCDPYTLAYYGYPYNALIGPNRDYFVKTGSIRGRGRGAAGNRT
                     PGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPNLEISAVNPVAIKPGTVAIPA
                     IGAQYSMFQAAPAPKIIEDGKIHTMEHMISPIAVQPDPATAAAAAAAAAAAAVIPAVS
                     TPPPFQGRPITPVYTVAPNVPRIPTAGIYGASYVPFAAPATATIATLQKNAAAAVYGG
                     YAGYIPQAFPAALQVPIHDVYQTY"
     exon            1278..1484
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1690
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /inference="alignment:Splign:2.1.0"
     exon            1691..2361
                     /gene="Rbm47"
                     /gene_synonym="RGD1359713"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgcctcaaa gaatacttca agaactgaac agagaaatcc caagtgagct gcctgaatct
       61 tcgcgaattc tcttgttcta ccttccatag aaagaccaat caaattgctg acttttggtt
      121 tcctccagct gtggatgcct ttgacattat gactgcagaa gattccacca cagccatgaa
      181 cagcgatcca acagtggggt cctccaccaa ggtaccggag ggtgtggcgg gcgcgcccaa
      241 tgaggctgca ctgttggcac tgatggagcg caccggttac aacatggtac aggagaatgg
      301 gcagcgcaag tatggtggac ccccgcccgg ctgggagggc ccgcatcccc agcgtggctg
      361 tgaggtcttc gtgggcaaga tcccacgtga tgtgtatgaa gatgagctgg tgcctgtgtt
      421 tgagacggta ggtcgcatct acgagctgcg cctcatgatg gatttcgatg gcaagaaccg
      481 cggctatgcc ttcgtgatgt actgccacaa gcacgaggcc aagcgagctg tccgtgagct
      541 caacaactat gagatccgcc cgggtcgtct gctgggagtg tgctgcagtg tggacaactg
      601 ccgcctcttc atcggtggca tccccaagat gaagaagcgt ggggagatcc tggaggagat
      661 cgccaaggtc accgagggcg tgctcaacgt gattgtgtat gccagtgcag cagacaagat
      721 gaaaaaccga ggcttcgcct ttgtggaata tgagagccat cgggccgcag caatggcccg
      781 tcgcaagctc atgccgggtc gtatccagct gtggggccac cagatagccg tggactgggc
      841 cgagccagag attgatgtag atgaggatgt gatgcagacc gtgaagatcc tctacgtgcg
      901 caacctcatg atcgagacca ccgaggagac catcaagagg agctttggcc agttcaaccc
      961 aggctgtgtg gaaagagtca agaagatccg tgactacgcc ttcgtgcact tcactagccg
     1021 cgaggacgct gtgcacgcta tgaacaacct caatggcaca gagctggagg gctcctgctt
     1081 agaagtcacg ctggccaagc ctgtggacaa ggagcagtac tctcgctacc agaaggcagc
     1141 caagggtggc ggtggctcag ctgaggcagt ggcacaacag cccagctacg tgtactcctg
     1201 tgacccctac acgctggcct attatggcta cccctacaac gcgctcatcg ggcccaaccg
     1261 ggactacttc gtgaaaacag gcagcataag aggccgagga cgcggtgcag ctgggaacag
     1321 aaccccgggg cccaggggtt cctacctggg agggtattct gccggccgtg gcatatatag
     1381 ccgatatcac gaaggcaagg gcaaacagca ggagaaagga tacgagctcg tgccgaacct
     1441 ggaaatctct gccgtcaacc cagtggccat caaacctggc acagtggcca tccctgccat
     1501 tggtgcccag tactccatgt tccaggcagc cccggcccct aaaataattg aagatggcaa
     1561 gatccacaca atggaacaca tgatcagccc cattgcggtg cagccagacc cggccactgc
     1621 tgctgccgcc gccgctgccg ctgctgctgc tgctgtcatt cctgcggtat ccacaccgcc
     1681 gcctttccag ggccgtccaa taactcctgt gtacactgtg gcaccaaatg ttccgagaat
     1741 ccccaccgcc ggcatctacg gggccagcta tgtccccttt gctgctccgg ccactgccac
     1801 aatcgccaca ctacagaaga acgctgcagc cgccgtgtac gggggctacg cgggctacat
     1861 acctcaggcc ttccctgctg ctctccaggt gcccatccac gacgtctacc agacttactg
     1921 agaccgggga ccagaaaggc aagccaccaa accccgccga aggaacactc tattatttat
     1981 gaagaaagaa cgtgtcgggt tgacacacgt gtaaaacctg caagtgaaga agaatgttat
     2041 caaatagcac actgaaatat tttatatcca tgaagttttc actcatgttt ttttgaaaat
     2101 gacttttcaa tttagcaggc ccgcgttcat acatttctaa gagacttgcg acgcctcatg
     2161 ccttaacatc atcttttaaa gtttgtatgc tctactgtgt ttgtacagag gtttggtttt
     2221 gttttttaag gatatatttt cagtatgaag gttattttct taacttctgc actccagagt
     2281 tttctatttt gtagaacctt tcaaaatata tcagctctct ctatatatat gtatatgtat
     2341 atccaaaaaa aaaaaaaaaa aaaaaaaaa
//
