LOCUS       NM_001135717            1788 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 46 (Rbm46), mRNA.
ACCESSION   NM_001135717 XM_227311
VERSION     NM_001135717.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Wang,C., Chen,Y., Deng,H., Gao,S. and Li,L.
  TITLE     Rbm46 regulates trophectoderm differentiation by stabilizing Cdx2
            mRNA in early mouse embryos
  JOURNAL   Stem Cells Dev 24 (7), 904-915 (2015)
   PUBMED   25397698
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 8, 2008 this sequence version replaced XM_227311.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.12641.1,
                                           SRR26360181.1621883.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-175               JAXUCZ010000002.1  170539894-170540068 c
            176-337             JAXUCZ010000002.1  170530190-170530351 c
            338-805             JAXUCZ010000002.1  170528773-170529240 c
            806-1588            JAXUCZ010000002.1  170527488-170528270 c
            1589-1788           JAXUCZ010000002.1  170497089-170497288 c
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1788
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /note="RNA binding motif protein 46"
                     /db_xref="GeneID:310548"
                     /db_xref="RGD:1560205"
     exon            1..175
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /inference="alignment:Splign:2.1.0"
     exon            176..337
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /inference="alignment:Splign:2.1.0"
     CDS             187..1788
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /codon_start=1
                     /product="probable RNA-binding protein 46"
                     /protein_id="NP_001129189.1"
                     /db_xref="GeneID:310548"
                     /db_xref="RGD:1560205"
                     /translation="MNEENTDGTNGCSKVRTGTQNEAALLALMEKTGYNMVQENGQRK
                     FGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRG
                     YAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDE
                     MKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQV
                     DWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFV
                     HFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQISPNSENLLVYA
                     NKEESHSKSLGKPPTLPTRLNGQHSPSPPEIERCTYPFFPGTKLTPISMYSLKSNHFN
                     SAVMHLDYYCNKNNWAPPEYYLYSTTSQDGKVLLVYKIVIPAIANGSQSYFMPDKLCT
                     TLEDAKELAAQFTLLHLDYNFRRSSINSLSPVSATLSTGTPSVLPYTSRPYSYPSYPL
                     SPTISLANGSHVGQRLYISNQASFF"
     exon            338..805
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /inference="alignment:Splign:2.1.0"
     exon            806..1588
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..1788
                     /gene="Rbm46"
                     /gene_synonym="RGD1560205"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggctccga ggcacgagga ctgcacgagc gccactggcc acgccctgcc ccgtccggcc
       61 ccgcggcgac tcctctggcc accgcttccg cccacagcgc tgatccaaag ctctggcggc
      121 ggtttgtgct cgttggtcca gggattttag gtctggcctt tgaagacccg acggggaatt
      181 gcagccatga acgaagagaa cactgatgga acaaatggat gcagtaaagt acgcactggc
      241 actcagaatg aagccgcatt gctggctctg atggaaaaga ctggctacaa catggtccaa
      301 gaaaatgggc aaaggaaatt tggtggtcct cctccaggtt gggaaggtcc acctccccct
      361 agaggttgtg aagtttttgt tggaaaaata cctcgtgata tgtatgaaga tgaattggtt
      421 cctgtatttg aaagagctgg gaagatatat gaatttcgac tgatgatgga atttagtggt
      481 gaaaatagag gttatgcttt cgtgatgtat actactaaag aagaagctca attagccatc
      541 cggattctta acaattatga gattcgacct gggaagttta ttggtgtgtg tgtaagcttg
      601 gataattgca gattatttat tggagcaatt cccaaagaaa agaaaaagga agaaattttg
      661 gatgaaatga agaaagttac agaaggtgtt gtagatgtga ttgtttatcc aagtgcaact
      721 gacaaaacca agaaccgcgg ttttgcattt gttgagtatg agtctcacag agctgctgct
      781 atggccagga gaaagctgat tccaggaaca tttcaactct ggggccacac cattcaggta
      841 gattgggctg atccagagaa agaagttgat gaggaaacca tgcagagagt taaagttctc
      901 tatgtaagaa atctaatgat ctcaaccaca gaggaaacaa ttaaagcaga attcaataag
      961 ttcaagcctg gtgcagtgga acgagtaaag aaacttagag attatgcatt cgttcacttt
     1021 ttcaaccggg aagatgcagt ggctgctatg tctgttatga atggaaaatg cattgatgga
     1081 gccagtattg aggtaaccct ggcaaagcca gtaaataaag aaaatacttg gcgacagcat
     1141 cttaatggcc agatcagccc caattcagaa aacctacttg tttatgctaa caaggaagag
     1201 agtcactcca aaagtctagg caagccacca actctcccca cgcgtctcaa tggtcagcat
     1261 agtccaagcc cccctgagat tgaaagatgt acttatcctt tttttcctgg aacaaagctt
     1321 accccaatta gtatgtattc tttaaaatcc aatcatttta attctgcagt gatgcatttg
     1381 gattattact gcaacaaaaa taattgggca ccaccagaat attatttata ttcaacaacc
     1441 agtcaggatg gaaaagtact cttggtgtat aaaatagtta ttcctgcaat tgcaaatgga
     1501 tcccagagtt acttcatgcc agataaactc tgcacaacgc tggaggatgc aaaggaactg
     1561 gcagctcagt ttacactgct tcatttggac tacaatttcc gtcgcagctc aataaatagt
     1621 ctttcccctg ttagcgctac cctctctact gggacaccca gcgtgcttcc ttatacttca
     1681 aggccttatt cttatccaag ctatcccttg tcaccaacaa tatcacttgc taatggcagc
     1741 catgttggac aacgactata tatctccaat caggcctcat tcttctga
//
