LOCUS       NM_001419673            4159 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 44 (Rbm44), mRNA.
ACCESSION   NM_001419673 XM_576610
VERSION     NM_001419673.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4159)
  AUTHORS   Iwamori,T., Lin,Y.N., Ma,L., Iwamori,N. and Matzuk,M.M.
  TITLE     Identification and characterization of RBM44 as a novel
            intercellular bridge protein
  JOURNAL   PLoS One 6 (2), e17066 (2011)
   PUBMED   21364893
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Apr 13, 2023 this sequence version replaced XM_576610.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.51998.1,
                                           SRR26360181.1977113.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-226               JAXUCZ010000009.1  99178741-99178966
            227-317             JAXUCZ010000009.1  99182960-99183050
            318-1828            JAXUCZ010000009.1  99188653-99190163
            1829-1878           JAXUCZ010000009.1  99190396-99190445
            1879-2049           JAXUCZ010000009.1  99191745-99191915
            2050-2233           JAXUCZ010000009.1  99192787-99192970
            2234-2256           JAXUCZ010000009.1  99193066-99193088
            2257-2341           JAXUCZ010000009.1  99193203-99193287
            2342-2456           JAXUCZ010000009.1  99195540-99195654
            2457-2585           JAXUCZ010000009.1  99196214-99196342
            2586-2665           JAXUCZ010000009.1  99198154-99198233
            2666-2739           JAXUCZ010000009.1  99198330-99198403
            2740-3025           JAXUCZ010000009.1  99200173-99200458
            3026-3171           JAXUCZ010000009.1  99202144-99202289
            3172-3317           JAXUCZ010000009.1  99202406-99202551
            3318-4159           JAXUCZ010000009.1  99203497-99204338
FEATURES             Location/Qualifiers
     source          1..4159
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q36"
     gene            1..4159
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /note="RNA binding motif protein 44"
                     /db_xref="GeneID:501183"
                     /db_xref="RGD:1566074"
     exon            1..226
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            227..317
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     CDS             245..3301
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /codon_start=1
                     /product="RNA-binding protein 44"
                     /protein_id="NP_001406602.1"
                     /db_xref="GeneID:501183"
                     /db_xref="RGD:1566074"
                     /translation="MQATAVVETDSDKSYHKNGGHLQNDKLYYPKKENMLFSNGCNRV
                     KLTFPDGEGDSLTTDERTNVKENSSVDKRDLSELSFSETQDTNVENLFSQSSEFEDNI
                     EYAFLNETYSIHYSESKLKDENILHLYSELDPEVHERVEVFFDTFGPQGNNDIGLGRS
                     CEALGSACGDMQKSDVREDSQQEYHSAELECLSAHLAVDPAKTVSRSSLDVSEWRTSS
                     YTFKCGGNLEVNRGKLESGPIPFLESLNGFSPKCSPQVSTSPSSDMLKEYHEPKYEKY
                     KEQEVGLTYHKTFDDILQRSSSPLNSQKVPEPLVYAKEMKSQTIEGKDFYGDRIFQNR
                     ALQHPENAMFPQDHALETPLKALDAHQLSGPYVLDDSVISLCGSLQYNSLPEPGFYSP
                     VMPRVAVTDSQAEVAGSCLHHVQGSATNKTCSLMKEMCLKSGPDAANCVALGQQTLDV
                     SGRANVSSSVVSTASTTETKTVRRSQPEEWQRDRQSVACNTDWSCGQQCRSARAAALG
                     SDSGRPLSTDCLNCGNSMDENSLELRKTPDKQRHPERAFQLCEEMALPSKCCEKTTER
                     AVKAETHLLDVCYQMCHHHCHHIYKLVMGSRAGLSRNLPTDSAQKELGTALLSVLEDL
                     KARYMNLKGKVHKGIPLEELPPLSVESKLLSAFSDFASRLMKEEACSLSGANSELDNQ
                     SLPEVAISPSLLKTLSQMSSISDSSHPKQDKLPMNNIFKNCDINIDFNHLKLNDKESK
                     NVHEASEDWFDATERLTGTDFSVTQENITESEDWDPKNPLELKTIERLRRGKGFLIHV
                     GGLCPSVSEADLRSHFQKYQVSEISIYDSNTNYRYASLACAKNSNAKMAVKEMNGVEI
                     NGKSVNVRLVKIPGEYIPPLLSTAGNNISMNHLERNSSKDATSAASTCRLPIARSGQL
                     ESEQDSEFLPLVQGVRENCNQVKSGQSLPETPFQFIPPHTLNLRSFTKIMKRLAELHP
                     EISRDHIIEALQEVRINHKGFLNGLSINTIVKMTSSFLRNAASRLK"
     exon            318..1828
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1878
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2049
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2050..2233
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2234..2256
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2257..2341
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2342..2456
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2457..2585
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2586..2665
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2666..2739
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            2740..3025
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            3026..3171
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            3172..3317
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
     exon            3318..4159
                     /gene="Rbm44"
                     /gene_synonym="RGD1566074"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actcgttgga aagcagagga ggcagcgaga gcaacctgga ggagtggttc gacggcaggg
       61 acacaggcga caggcgatgc ttatggtgag cctggcgagg cgagacacca cagcctcacc
      121 ctcaccctca cccccaccct gggcaagtgc gtctgggagc ctgttccagc cggtgttacc
      181 ctgcagcaaa gcgccggtca gtggcatctg tgatcccacc accaagaacg tacatctttg
      241 aactatgcag gccactgcag tggtagaaac agattctgat aaaagctacc acaaaaatgg
      301 aggacacctc caaaacgata aactttatta tcctaagaaa gaaaatatgt tattttccaa
      361 tggttgcaac agagtcaaat tgacctttcc tgatggtgaa ggggactcct tgacaacaga
      421 tgaaaggact aatgtcaaag agaacagcag tgttgacaag agagatttgt cagaactgtc
      481 attttcagaa actcaagata ctaacgtaga gaatcttttc tcccagtcaa gtgaatttga
      541 ggacaatatt gagtatgctt ttttgaatga gacctattct atccattatt cagaatcaaa
      601 actcaaggat gaaaatattt tgcatttata ttcagaatta gatcctgaag tacacgaaag
      661 agtggaggtg ttttttgaca cttttggacc tcaaggtaat aatgacatcg gattgggaag
      721 gagctgtgag gcgctgggct ctgcctgtgg agacatgcag aagagcgatg tgcgtgaaga
      781 ctcgcagcag gagtaccaca gcgcagagct ggagtgcctg agcgcacatt tagcggttga
      841 cccagcgaag acagtgagca ggtctagtct ggatgttagt gagtggagaa catcaagcta
      901 tacctttaaa tgtggcggca atttagaagt taatcgtggt aaattagaga gtggtcctat
      961 cccctttttg gagtcactta atggtttttc accaaaatgt tcgcctcaag tctctacatc
     1021 tccgagttct gatatgttaa aagaatatca tgagccaaaa tatgaaaaat ataaggagca
     1081 agaagttggt ttaacatatc acaaaacatt tgatgacatt ttacagagaa gcagttctcc
     1141 tttaaactct cagaaagtac ctgaacctct agtttatgcc aaagaaatga agtctcagac
     1201 gattgaaggt aaagacttct atggagatag aattttccag aacagagcat tacagcaccc
     1261 tgagaatgct atgtttcccc aggaccacgc ccttgagaca cccctgaagg ctctcgatgc
     1321 tcaccagctt tctgggccgt atgttctcga tgactcagtc atttccctct gtggctcttt
     1381 gcagtacaat agcctcccgg agccaggctt ttactcgcct gtgatgccac gggtggcagt
     1441 cacagatagt caggcagaag tagcgggcag ctgcctacac catgtacaag gcagtgccac
     1501 aaataaaaca tgctctctta tgaaagaaat gtgccttaag tcagggccag atgcagcaaa
     1561 ctgtgtagct ttaggtcagc agacactgga tgtgagcggc agagcaaatg taagctcttc
     1621 tgtagtgtct acagcaagca ccacagagac aaagacagtg agacggagtc agcctgagga
     1681 gtggcaacgt gacagacaaa gcgtggcctg taacactgac tggtcatgtg ggcagcagtg
     1741 cagaagtgcc cgggcggctg ccctgggaag tgactcagga aggccactct caactgactg
     1801 tttaaactgt ggaaactcca tggatgagaa ttccttggaa ttaagaaaaa caccagacaa
     1861 acagagacat ccagagaggg catttcagct ctgtgaagag atggctttgc catcaaagtg
     1921 ctgtgagaag accacagaga gggccgtgaa ggcggagacg caccttctgg atgtttgcta
     1981 ccagatgtgc caccaccact gtcaccacat ttacaaactc gtaatgggga gcagagcggg
     2041 gctcagtagg aatttaccaa ctgattctgc tcagaaggaa ttagggacag cactgctgtc
     2101 tgttctggaa gacttgaaag ctaggtacat gaacttgaaa ggaaaagtcc acaagggcat
     2161 acccctggaa gagctgcccc cactgtctgt ggagtccaag ctgttgtctg ccttctccga
     2221 ctttgcttcc aggctaatga aagaagaagc atgcagcctt tcaggagcaa attctgagct
     2281 ggataatcaa agcttacctg aagttgctat ttctccaagc ctgttaaaga ctttgtccca
     2341 gatgtcttct atatctgaca gtagtcatcc taagcaagat aaattaccca tgaacaatat
     2401 ttttaaaaat tgtgatataa acatagattt taatcacctg aagctcaatg acaaagagtc
     2461 taaaaatgtc catgaagcaa gtgaagactg gtttgatgcg acagagaggc tgactggaac
     2521 tgacttctca gtaactcaag aaaacataac agaatctgag gactgggatc caaagaatcc
     2581 attagaattg aagactattg aacggcttcg aagaggtaaa ggctttttga tacatgttgg
     2641 tggtctttgc ccttctgtat ctgaggctga tttaaggtct catttccaga aataccaagt
     2701 ttctgaaatt tcgatttatg attctaatac taattacaga tatgcatctc ttgcctgtgc
     2761 aaaaaacagt aatgcaaaga tggccgtgaa ggagatgaat ggagtggaaa tcaatgggaa
     2821 atccgtgaac gtgcggcttg tgaaaatccc gggagaatac ataccaccgc ttttgtccac
     2881 agccggaaac aacattagta tgaatcactt ggagagaaat agcagcaaag atgccacctc
     2941 tgccgcttcc acttgtcggc tgcccatagc tagatcaggg cagctggagt ctgagcaaga
     3001 cagtgagttt cttcccttgg tccagggtgt cagggaaaat tgtaaccagg tcaaatctgg
     3061 tcagtcatta cctgagacac cttttcagtt catacctcca catacattga accttcgtag
     3121 cttcaccaag atcatgaaga ggttggctga actgcaccca gagatcagca gagaccacat
     3181 tatagaggcc cttcaggaag tgaggataaa tcacaaaggt tttctgaatg gtttgtccat
     3241 caataccatt gtaaaaatga cttcatcttt tctgagaaac gctgcttccc gtttgaaata
     3301 agtgaagcag tacagagaaa atctttggaa agtagcagtg cccttcatca gagaaacttc
     3361 tgcagcaatt aggaaaaggc cgtggtaata cagacagaca gcgtattcta tttgatcgtc
     3421 ctcctttcaa acctgacgac aacagataac tatgtagtat taaagtctgc atgtatgctt
     3481 tattatgttt ataaacttta tttcaaaatt attactcaag actcaagctg tgtattttga
     3541 accagaaaaa aatgtggtca tgtccattta taaattatca ttaataagtc cgtttaaaag
     3601 atactgccta gaaaaagttt atttctactg tttcaaagtt cattacacat gtaaaaatta
     3661 tgtgaacttt ttacacaatt catatgtgaa aatagaattt ctatagagct tccatttgta
     3721 ctttaagctt ttcagattca gattggagca cagggttcag tgcacacaga gcagagctga
     3781 gcctcctgtg atgttagtgg tgtctgacag cagtaaggtg tgcagctctg tcttcccagg
     3841 tgcgctctgg caaggaactg aaccgtaagt ggtcaccatg ttctggcctg agtctaacta
     3901 cgttctgctg tgctagagta taaattgaat atgctgctct gtctccagca atatagaatg
     3961 tgagggcatc accctgttcc ctttgcagta gtaactaaca cactggccaa agtgcatttg
     4021 tacgataata gccttaacat tccgtactct gcagatgtta aattgtttcc agtgctccat
     4081 aggtgctgct tgatgaaaac ttacctatta cacatttgta tttgatgacc tgtgtgttta
     4141 ataaaggtgg ttagctcct
//
