LOCUS       NM_001014159            1682 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 42 (Rbm42), mRNA.
ACCESSION   NM_001014159 XM_341831
VERSION     NM_001014159.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Zheng,S., Damoiseaux,R., Chen,L. and Black,D.L.
  TITLE     A broadly applicable high-throughput screening strategy identifies
            new regulators of Dlg4 (Psd-95) alternative splicing
  JOURNAL   Genome Res 23 (6), 998-1007 (2013)
   PUBMED   23636947
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BP504208.1, BC079321.1 and BI273871.1.
            
            On Mar 12, 2009 this sequence version replaced NM_001014159.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079321.1, SRR8487227.155205.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676788 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                BP504208.1         6-47
            43-1660             BC079321.1         1-1618
            1661-1682           BI273871.1         1-22                c
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1682
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /note="RNA binding motif protein 42"
                     /db_xref="GeneID:361545"
                     /db_xref="RGD:1306184"
     exon            1..235
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..1532
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /codon_start=1
                     /product="RNA-binding protein 42"
                     /protein_id="NP_001014181.2"
                     /db_xref="GeneID:361545"
                     /db_xref="RGD:1306184"
                     /translation="MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAE
                     MALFEQEVLGAPVTGIPTAVPAVPTVEAMQVPPAPVIRPIIATNTYQQVQQTLEARAA
                     AAATVVPPMVGGPPFVGPVGFGPADRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFV
                     PHVLQRADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGS
                     MAALRPPLEEPAAPRDLGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPA
                     VIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLM
                     ALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND
                     DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI
                     KLRKSMWKDRNLDVVRKKQKEKKKLGLR"
     exon            236..371
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            372..456
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            457..531
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            532..597
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            598..773
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            774..1106
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1224
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1419
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1664
                     /gene="Rbm42"
                     /gene_synonym="RGD1306184"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggtaatcca cacgtcatcg gccggctccc accctgaggg gacagggact cgaccgtaga
       61 acccgcggct gcggctgaaa agagcggcga aggccatggc atcagcgatg gccggagcgg
      121 gaccagctcc gggactcccg gtggcgggag ggcccgtggt cccggggcct ggtgtcggca
      181 tcccgggcaa gagcggcgaa gaacgcttga aagaaatgga ggcggagatg gccctgtttg
      241 agcaagaagt actgggagct ccggtgaccg gaatcccaac tgctgtgcct gcggtgccca
      301 cagtggaggc gatgcaggtt cccccagcac ctgtgatccg cccaattatc gccaccaaca
      361 catatcaaca ggtccaacag accctggagg cccgggcagc tgctgcagcc acagtagttc
      421 ctcccatggt gggaggccct ccttttgtgg gcccagttgg ctttggccct gctgatcgaa
      481 gtcacctgga cagtcctgag gctcgagagg ccatgttcct gaggcgagca gctgtggccc
      541 ctcagagggc ccctatcctg cgtcctgcct tcgtccccca cgtgctacag agagcagatt
      601 ctgctctttc ttctgcagct ggcggccccc gacctatggc cctgaggcct ccacaccagg
      661 ccctggttgg accccctctg cctgggcctc ctggaccacc catgatgcta ccaccaatgg
      721 ctcgggcacc tggaccaccc ctgggttcta tggctgccct gagacctccc ctggaagagc
      781 cagcagctcc tcgagatctg ggcctaggcc ttggtttagg cctgaaggag aaggaagaag
      841 cagtagtggc tgcagcggct gggctggagg aagctagtgc agcagtggct gtgggggcag
      901 gaggagcccc agccgggcct gcagtcattg gtcccagcct cccgctggcc ctagccatgc
      961 ccttgcctga gcccgagccc ttgcccctcc cgctggaggt ggtccgtggc ctgctgcctc
     1021 cacttcgaat tcctgagctc ctgtctctgc gcccacgacc tcggccccct cggcctgagc
     1081 cacctcctgg cctcatggcc ctagaggttc cagagccact gggtgaagac aagaagaaag
     1141 gcaagccaga gaaattgaaa cgctgcattc gtacagcagc agggagcagc tgggaggacc
     1201 ccagcctgct ggagtgggat gccgatgact tccgaatctt ctgcggggat ctgggcaatg
     1261 aggtgaacga tgacatcttg gcacgagcct tcagccgttt cccatccttc cttaaggcga
     1321 aggtgatccg tgacaagcgc acaggcaaaa ccaagggcta tggctttgtc agcttcaaag
     1381 accccagtga ctatgtgcgt gccatgcgtg agatgaatgg gaagtacgtg ggctcacgcc
     1441 ccatcaagct tcgcaaaagc atgtggaagg accggaatct ggatgtggtc cgtaagaagc
     1501 agaaggaaaa gaaaaagttg ggcctcagat agggtctgtg gctaggcacc cgctcccacc
     1561 cggccgtgcg ctagcttctt ccaacagttg tctgtgggaa acccccagct gtccactcac
     1621 ctctcccaaa accagtttca ataaattacc ttcatttcca tctcaaaaaa aaaaaaaaaa
     1681 aa
//
