LOCUS       NM_001109420            2732 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 41 (Rbm41), mRNA.
ACCESSION   NM_001109420 XM_001056089 XM_001056159
VERSION     NM_001109420.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001056159.1, XM_001056089.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.21569.1,
                                           SRR26643290.56305.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                JAXUCZ010000021.1  108448902-108448969 c
            69-185              JAXUCZ010000021.1  108445424-108445540 c
            186-378             JAXUCZ010000021.1  108444445-108444637 c
            379-583             JAXUCZ010000021.1  108443826-108444030 c
            584-987             JAXUCZ010000021.1  108412185-108412588 c
            988-1135            JAXUCZ010000021.1  108400575-108400722 c
            1136-2732           JAXUCZ010000021.1  108397169-108398765 c
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..2732
                     /gene="Rbm41"
                     /note="RNA binding motif protein 41"
                     /db_xref="GeneID:680581"
                     /db_xref="RGD:1590579"
     exon            1..68
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1302
                     /gene="Rbm41"
                     /codon_start=1
                     /product="RNA-binding protein 41"
                     /protein_id="NP_001102890.1"
                     /db_xref="GeneID:680581"
                     /db_xref="RGD:1590579"
                     /translation="MKRVNSCVKDEEHVLEELETEGERQLKSLLQHQLDTSVSIEECV
                     SKKKSFAPGTMYKPFGKEVAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHV
                     SGEKRTKLRATPEAIQKRLEDIKERISERQRILCLPQRFSKSKQLTRREMEIEKSLFQ
                     GTDRHSFLKALYYQDEPPKKNKGDPMNNLESFYHETIMKKRLEEFQLLRGEPFPSHSL
                     ASAASVSDSGTAESPSLLQDKGKQAAQGKGPSLHVAKVIDFPPEQCWTGPKKLKQPIE
                     FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQE
                     KKGPLIQFQMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVIEFAKSRKQQS
                     AAQCAPLIASATDGRAEINGS"
     exon            69..185
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     exon            186..378
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     exon            379..583
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     exon            584..987
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1135
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..2732
                     /gene="Rbm41"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttctgggagt tgaggtctgg ttcctattta cccaagttag agataggggc ctgcggaaac
       61 atgaagaggg taaatagctg tgtgaaggat gaagagcatg tcctggagga actggaaaca
      121 gaaggtgaga ggcagctcaa gagcctcctt caacatcaac ttgatacctc tgtctccatt
      181 gaagaatgtg tctctaaaaa aaagagcttt gcccctggga ctatgtacaa gccctttggg
      241 aaggaagtag ccgggacaat gactttgtcc cagttccaga cactacatga aaaagaccag
      301 gaaactgctt ctctcaggga actagggctc aatgaaacag aaatattgat ctggaaaagc
      361 catgtttcag gtgaaaagag gacaaagctg agggcaactc ccgaagcaat acagaaacgg
      421 cttgaagata ttaaagaaag gatctcggag cgccagcgca tcctctgcct gccacagagg
      481 ttttcaaaga gcaaacagct gacccgaaga gagatggaaa ttgaaaagtc tttatttcag
      541 ggaactgatc gtcactcctt ccttaaggct ctttattacc aagatgaacc cccaaagaag
      601 aacaaaggtg atcccatgaa caacctggaa agtttttacc acgagactat aatgaaaaaa
      661 cgtcttgaag agttccaact tttgagaggt gaaccctttc cttcccactc actggcctca
      721 gctgcatcag tgagtgatag tggcacagct gagagcccat cactcctcca ggacaaggga
      781 aaacaggcag cacagggtaa aggccccagt ctccatgtgg caaaagttat tgattttcca
      841 cctgagcaat gttggactgg gcctaagaag ctgaagcaac caatagaatt tatcccagaa
      901 gatgaaatcc agagaaatcg tttgtcagag gaggagatcc gaaacattcc tatgttttct
      961 tcatataatc caggggaacc aaacaaggtg ctatatctga agaaccttag tcctcgggtg
     1021 aaagaaagag accttatctc attattcgct cgattccagg agaaaaaagg accactcatt
     1081 cagttccaaa tgatgactgg acgcatgagg ggacaggctt tcatcacctt tcccaataaa
     1141 gacatagcat ggcaagcact gcaccaaatt aatggatata aactctatgg gaaaatattg
     1201 gtgatagagt ttgcgaagag cagaaagcag cagtcagctg ctcagtgcgc tccgcttata
     1261 gcatctgcta cagatggcag agcagaaatc aatggtagct agaaacccat atcaacccac
     1321 atgtacatgc acattggaat atatgtatgt agtatgtatg tatgtatgta aatatacact
     1381 cagatgattt tgcttttatc ataatcttag atcaagaatg tgtgtattct taaaaatttg
     1441 ttgaaaatag aagaggaaat attagaaaga cagaaattag gacaatggcc tcagcatttg
     1501 gaaagaattg ataaaaatac attctataat taaatactgt atagcatcaa aaagattata
     1561 taaaattgac aatatcctga gtgaaaaaaa ataataatga aacattctat atgtcagata
     1621 atactctgag tattaagatc atgtgaaaac ctttaattct caggaaatat tacataggac
     1681 tgttcctcaa gattccaaaa attctttaat agtttgtagt cttcagtgtt tagtcctaga
     1741 cataagactt tttctaggac tgtttcctgt atacaaagtt ttaaaagaaa cccagtgtta
     1801 aaataactat ttactagaac tcagactgta ttttgtccga actttcagca gtttcagtag
     1861 atagattcat aagttttatt tatttattta tttaatgatt gcttccacac tgttttcaga
     1921 gtcctcaaaa ccatatgtat tactataaca tcttttaaat attggtaatc tcatgatacg
     1981 attgagttcc aaacagtaca catttaacat ggagtacctg cctaatatat gttaaatatt
     2041 aggtacatga actttcaaga ggaatgaagt agcatatata ctaaagggac aaggaaagaa
     2101 agtgttttag aagaaagtca gcctgcctca aatcccctgg tgatttgttt agagtcattg
     2161 aagaatagga acctaatatg gtttagatgg tagaaccagc tttggagtta gacctgtgac
     2221 cctcaaagtc acccatgttt accaccctga gcttagaaag tcacttaatc tgagcctaat
     2281 ttatctcatc cataaatagt aacattgctt ctcacctccc tggttaaatg agattatact
     2341 atccaaggta aggaaaaagg ggaaaaatga aggaactcta aggaacttcc actaagtaca
     2401 tcaaacaaca tataataaga atcccattca aaaagggaga aggaagcata aaaatactgc
     2461 aaaaggatga gtaaaatggc tcagtgagta aaggcatttg ccaccaaaca ggaagacctg
     2521 agttcaaacc gtaggacctg ccaataacag ggcaaaaagg ataggagcta atgctgaagt
     2581 ttctctaaaa atagtgcgaa tccataggaa caaagaaaac aaaagggaaa tagtgcgaat
     2641 ccataggaag aaagaaaaca aaagggaaat agtgtgaatc cacaggaaaa aagaagacaa
     2701 aagggaaata gtgcgaatcc acaggaaaaa ag
//
