LOCUS       NM_001398951            1748 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus RNA binding motif protein 38 (Rbm38), transcript
            variant 1, mRNA.
ACCESSION   NM_001398951 XM_006235704
VERSION     NM_001398951.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1748)
  AUTHORS   Miyamoto,S., Hidaka,K., Jin,D. and Morisaki,T.
  TITLE     RNA-binding proteins Rbm38 and Rbm24 regulate myogenic
            differentiation via p21-dependent and -independent regulatory
            pathways
  JOURNAL   Genes Cells 14 (11), 1241-1252 (2009)
   PUBMED   19817877
REFERENCE   4  (bases 1 to 1748)
  AUTHORS   Warzecha,C.C., Sato,T.K., Nabet,B., Hogenesch,J.B. and
            Carstens,R.P.
  TITLE     ESRP1 and ESRP2 are epithelial cell-type-specific regulators of
            FGFR2 splicing
  JOURNAL   Mol Cell 33 (5), 591-601 (2009)
   PUBMED   19285943
REFERENCE   5  (bases 1 to 1748)
  AUTHORS   Shu,L., Yan,W. and Chen,X.
  TITLE     RNPC1, an RNA-binding protein and a target of the p53 family, is
            required for maintaining the stability of the basal and
            stress-induced p21 transcript
  JOURNAL   Genes Dev 20 (21), 2961-2972 (2006)
   PUBMED   17050675
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 28, 2021 this sequence version replaced XM_006235704.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1336980.1,
                                           SRR26643429.14807.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               JAXUCZ010000003.1  182219919-182220260
            343-466             JAXUCZ010000003.1  182220786-182220909
            467-521             JAXUCZ010000003.1  182221399-182221453
            522-1748            JAXUCZ010000003.1  182231497-182232723
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1748
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /note="RNA binding motif protein 38"
                     /db_xref="GeneID:366262"
                     /db_xref="RGD:1308503"
     exon            1..342
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..825
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     RNA-binding region (RNP1, RRM) containing 1; RNA-binding
                     protein 38"
                     /codon_start=1
                     /product="RNA-binding protein 38 isoform 1"
                     /protein_id="NP_001385880.1"
                     /db_xref="GeneID:366262"
                     /db_xref="RGD:1308503"
                     /translation="MLLQPACAPSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTT
                     DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKA
                     NVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPAIVQPSVVIPATPV
                     PSLSSPYLEYTPASPAYAQYPPATYDQYPYAASPATATSFVGYGYPAAIPPALSATAP
                     AGTTFVQYQAPQLQPDRMQ"
     exon            343..466
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /inference="alignment:Splign:2.1.0"
     exon            467..521
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /inference="alignment:Splign:2.1.0"
     exon            522..1748
                     /gene="Rbm38"
                     /gene_synonym="Rnpc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtagacg cttcgccgcg gaccgaggag cggcgcggaa cggcgtgggg aactcggatt
       61 cggcctgcga cacccccgca tgcgccggcc ggcccggtag cggcggcccc aatgctgctg
      121 cagcccgcgt gcgccccgag tgtgtttccg cggccgtccg ccgcccccag cgccatgcac
      181 ggctcacaga aggacaccac gttcaccaag atcttcgtgg gcggcctgcc ctaccacacc
      241 accgacgcat cgctcagaaa gtacttcgag ggctttggag acatcgagga ggccgtggtc
      301 atcaccgacc gccagaccgg caagtcccgc ggctacggct tcgtgaccat ggcagatcgg
      361 gcagcagctg atagggcttg caaagaccct aaccctatca tcgatggccg caaggccaac
      421 gtgaacctgg cctacctggg tgccaagcct aggagcctgc agacgggctt tgccgttggt
      481 gtgcagcaac tacaccccac cttgatccag cgcacctacg ggctgactcc ccactacatc
      541 tacccaccag ccattgtaca gcccagcgtg gtgatccctg ccacccctgt cccgtcactg
      601 tcctcgccct accttgagta tacaccagcc agcccagcct acgctcagta ccctccagcc
      661 acttacgacc agtacccata cgccgcctcg cctgccacgg ccaccagctt cgtgggctat
      721 ggctaccctg ccgccattcc cccagccttg tctgccacgg cacctgcagg caccaccttc
      781 gtgcagtacc aggcacctca gctacagcct gacaggatgc agtgaggcgc gtcctgcaca
      841 gggccacagc caccacctgc cagccttggg agccaccacc acatgggtct cctcaggccc
      901 cggggcccac ctgccctgaa ggcaccagca agcttcttct gcagccctgc cgtgcttgag
      961 gaagggcctg agaaggaagg tacactctgg gagttctgca gccactctgt gctaggtgcc
     1021 ttactctggg acgcataaga cgtcctccct cctctttggg aactgtcctc ttggtggatc
     1081 cgggttcccg aaaccccgcc caggtgccct cagccgaagc actgtgccat gtcctgctgg
     1141 gaattttctg tggtgcaggc aagaccatca gcaccgagag ccccaaacct atttttactt
     1201 agagactggc tttggtcagt agctccctgt ggagacagtt gacagtattt ctctgtgccg
     1261 gtgtcactga tggagctgcc cctcccccgc agggttgccc tcacaaactg cagccctgca
     1321 gggggctggg ctcctgtctg ctgatgctgc ccacctcacc tgcagaggtg cctgccaggg
     1381 cgagttctca ggtgtctgtt gctgtgccat gggggccttc ttctggccct gtgcccctca
     1441 ggcaggctct gtgcccaccc agccccccat tgtcacctgt accagtctgg agcatgacct
     1501 agctgcacag ggagaaggtc cagcccacac acgtctggga ggggaggagt gggcatctct
     1561 ggcagcatgg gctgcccaca ggctgggcag tgggtccctc cacacctacc tcagggagcc
     1621 agtgtgtagg cactccacag catgcctgtt agtcaaggcc tggaggacag agggagtaat
     1681 gttataataa tatttttatt agaatgttct gattataaaa aataaaactt gttttcttta
     1741 aagaaaaa
//
